Job Description P32718 Confidence 91.05% Date Thu Jan 5 11:50:41 GMT 2012 Rank 133 Aligned Residues 249 % Identity 12% Template c1mwmA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form Resolution 2.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																																.	.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	A	G	V	D	M	G	A	T	H	I	R	F	C	L	R	T	A	E	G	E	T	L	H	C	E	K	K	R	T	A	E	V	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	L	V	S	G	I	G	E	M	I	D	E
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	L	V	F	I	D	D	G	S	T	N	I	K	L	Q	W	Q	E	S	D	G	T	I	K	Q	H	I	S	P	N	S	F	K	R	E	W	A	V	S	F	G	D	K	K	V	F	N	Y	T	L	N	G	E	Q	Y	S	F	D	P	I	S	P	D	T	N	I	A	W	Q	Y	S	D	V	N	V	V	A	V	H	H
Template Known Secondary structure										S	S									T	T	S													S	S					S	S	S	S							S	S	S														T	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.														110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	R	R	F	N	A	R	C	H	G	L	V	M	G	F	P	A	L	V	S	K	D	K	R	T	I	I	S	T	P	N	L	P	L	T	A	A	D	L	Y	D	L	A	D	K	L	E	N	T	L	N	C	P	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	F	S	R	D	V	N	L	Q	L	S	W
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		A	L	L	T	S	G	L	P	V	S	E	V	D	I	V	C	T	L	P	L	.	.	.	.	.	.	.	.	.	T	E	Y	Y	D	R	N	N	Q	P	N	T	E	N	I	E	R	K	K	A	N	F	R	K	K	I	T	L	N	G	G	D	T	F	T	I	K	D	V	K	V	M	P	E	S	I	P	A	G	Y	E
Template Known Secondary structure					T	S	S			S												.	.	.	.	.	.	.	.	.				B		T	T	S		B												T	T	S					T	T	B													S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.										.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	V	E	N	R	L	T	Q	Q	L	V	L	A	A	Y	L	G	T	G	M	G	F	A	V	W	M	N	G	A	P	W	T	G	A	H	G	V	A	G	E	L	G	H	I	P	L	G	D	M	T	Q	H	C	A	C	G	N	P	G	C	L	E	T	N	C	S	G	M	A	L	R	R	W	Y	E	Q	Q	P	R
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	Q	E	L	D	E	L	D	S	L	L	I	I	D	L	G	G	T	T	L	D	I	S	Q	V	M	G	K	L	S	G	I	S	K	I	Y	G	D	S	S	L	G	V	S	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	A	V	K	D	A	L	S	L	A	R	T
Template Known Secondary structure				T	T	S		T	T										S	S									G	G	G										T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T			T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																					.	.	.	.	.	.	.	210	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.																					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		N	Y	P	L	R	D	L	F	V	H	A	E	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	V	Q	S	L	L	E	N	A	A	R	A	I	A	T	S	I	N	L	F	.	D	P	D	A	V	I	L	G	G	G	V	M	D	M	P	A	F	P	R	E	T	L	V	A
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.															.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		K	G	S	S	Y	L	A	D	D	I	I	I	H	R	K	D	N	N	Y	L	K	Q	R	I	N	D	E	N	K	I	S	I	V	T	E	A	M	N	E	A	L	R	K	L	E	Q	R	V	L	N	T	L	N	E	F	S	G	Y	T	H	V	M	V	I	G	G	G	A	E	L	.	.	.	I	C	D	A	V	K	K
Template Known Secondary structure		G	G	G										T	T	T										S		S																										T	T			S								S	T	T				.	.	.
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	Q	K	Y	L	R	R	P	L	P	H	Q	V	V	R	F	I	A	A	S	S	S	D	F	N	G	A	Q	G	A	A	I	L
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.
Template Sequence		H	T	Q	I	.	.	.	.	.	.	.	.	R	D	E	R	F	F	K	T	N	N	S	Q	Y	D	L	V	N	G	M	Y	L	I
Template Known Secondary structure				T		.	.	.	.	.	.	.	.		G	G	G					S		G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.									.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions