Job Description P37647 Confidence 100.00% Date Thu Jan 5 11:56:19 GMT 2012 Rank 16 Aligned Residues 285 % Identity 22% Template c3in1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli Resolution 2.15 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.														.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	K	K	I	A	V	I	G	E	C	M	I	E	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	G	A	D	V	K	R	G	F	G	G	D	T	L	N	T	S	V	Y	I	A	R	Q	V	D	P	A	A	L	T	V	H	Y	V	T	A	L	G	T	D	S	F	S	Q	Q	M	L	D	A	W
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.													.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation				.	.																																																		.	.	.	.
Template Sequence		L	D	.	.	V	I	C	I	G	A	A	I	V	D	I	P	L	Q	P	V	S	K	N	I	F	D	V	D	S	Y	P	L	E	R	I	A	X	T	T	G	G	D	A	I	N	E	A	T	I	I	S	R	L	.	.	.	.	G	H	R	T	A	L	X	S	R	I	G	K	D	A	A	G	Q	F	I	L	D	H	C
Template Known Secondary structure				.	.					S													S	S	G	G	G	S	S					S								S												T	.	.	.	.	T											S	S
Template Predicted Secondary structure				.	.																																																		.	.	.	.
Template SS confidence
		4	.			.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	E	N	V	D	T	S	L	T	Q	R	M	E	N	R	L	P	G	L	Y	Y	I	E	T	D	S	T	G	E	R	T	F	Y	Y	W	R	N	E	A	A	A	K	F	W	L	E	S	E	Q	S	A	A	I	C	E	E	L	A	N	F	D	Y	L	Y	L	S	G	I	S	L	A	I	L	S	P	T	S	R	E
Query Conservation
Alig confidence																																												.	.	.	.																										.	.
Template Conservation																																												.	.	.	.																										.	.
Template Sequence		R	K	E	N	I	D	I	Q	S	L	K	Q	D	V	S	I	D	T	S	I	N	V	G	L	V	T	E	D	G	E	R	T	F	V	T	N	R	N	G	S	L	W	.	.	.	.	K	L	N	I	D	D	V	D	F	A	R	F	S	Q	A	K	L	L	S	L	A	S	I	F	N	.	.	S	P	L	L	D	G	K
Template Known Secondary structure					T		B		T	T					T	T	S											T	T	S								T	T	S				.	.	.	.				G	G	G			G	G	G	G	G	G		S								T	T	.	.	S	T	T	S
Template Predicted Secondary structure																																												.	.	.	.																										.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	L	S	L	L	R	E	C	R	A	N	G	G	K	V	I	F	D	N	N	Y	R	P	R	L	W	A	S	K	E	E	T	Q	Q	V	Y	Q	Q	M	L	E	C	T	D	I	A	F	L	T	L	D	D	E	D	A	L	W	G	Q	Q	P	V	E	D	V	I	A	R	T	H	N	A	G	V	K	E	V	V	V
Query Conservation
Alig confidence																														.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		A	L	T	E	I	F	T	Q	A	K	A	R	Q	X	I	I	C	A	D	X	I	K	P	R	L	N	E	T	.	.	.	.	.	L	D	D	I	C	E	A	L	S	Y	V	D	Y	L	F	P	N	F	A	E	A	K	L	L	T	G	K	E	T	L	D	E	I	A	D	C	F	L	A	C	G	V	K	T	V	V	I
Template Known Secondary structure												T	T	T											S	S	S			.	.	.	.	.	G	G	G	G					T	T		S					B												S											T	T		S
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	G	A	D	S	C	L	V	S	I	A	G	E	G	L	V	D	V	P	A	V	K	L	P	K	E	K	V	I	D	T	T	A	A	G	D	S	F	S	A	G	Y	L	A	V	R	L	T	G	G	S	A	E	D	A	A	K	R	G	H	L	T	A	S	T	V	I	Q	Y	R	G	A	I	I	P	R	E	A	M
Query Conservation
Alig confidence																	.	.	.																																																								.	.	.
Template Conservation																	.	.	.																																																								.	.	.
Template Sequence		K	T	G	K	D	G	C	F	I	K	R	G	D	X	T	.	.	.	X	K	V	P	A	V	A	G	I	T	A	I	D	T	I	G	A	G	D	N	F	A	S	G	F	I	A	A	L	L	E	G	K	N	L	R	E	C	A	R	F	A	N	A	T	A	A	I	S	V	L	S	V	G	A	.	.	.	T	T	G	V
Template Known Secondary structure				G	G	G							T	T			.	.	.							S	S				S			T	T															T	T																			T	S	S	S	S	.	.	.	S	S	S
Template Predicted Secondary structure																	.	.	.																																																								.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.				.	.	.	300
		308
Predicted Secondary structure
Query SS confidence
Query Sequence		P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		301

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions