Job Description P67430 Confidence 99.87% Date Thu Jan 5 12:10:35 GMT 2012 Rank 31 Aligned Residues 189 % Identity 12% Template c3gziA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		M	N	K	H	T	E	H	D	.	T	R	E	H	L	L	A	T	G	E	Q	L	C	L	Q	R	G	F	T	G	M	G	L	S	E	L	L	K	T	A	E	V	P	K	G	S	F	Y	H	Y	F	R	S	K	E	A	F	G	V	A	M	L	E	R	H	Y	A	A	Y	H	Q	R	L	T	E	L	L	Q	S	G	E
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		V	G	R	P	S	G	D	T	Q	N	R	D	K	L	I	L	A	A	R	N	L	F	I	E	R	P	Y	A	Q	V	S	I	R	E	I	A	S	L	A	G	T	D	P	G	L	I	R	Y	Y	F	G	S	K	E	K	L	F	S	T	X	I	H	E	T	A	X	P	V	L	A	Q	L	H	K	A	R	R	E	T	R
Template Known Secondary structure																									T	S			S												T	S		T								S	S																										T	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	Y	R	D	R	I	L	A	Y	Y	Q	Q	T	L	N	Q	F	C	Q	H	G	T	I	S	G	C	L	T	V	K	L	S	A	E	V	C	D	L	S	E	D	M	R	S	A	M	D	K	G	A	R	G	V	I	A	L	L	S	Q	A	L	E	N	G	R	E	N	H	C	L	T	F	C	G	E	P	L	Q	Q
Query Conservation
Alig confidence				.	.	.																									.	.
Template Conservation				.	.	.																									.	.
Template Sequence		Q	E	.	.	.	S	P	A	A	L	L	Q	T	Y	Y	S	V	X	S	K	H	P	H	F	P	R	L	X	L	.	.	R	I	A	G	L	D	Q	S	L	P	E	N	A	E	V	T	K	A	F	Y	E	V	V	N	F	E	N	I	A	I	F	Q	R	L	K	D	K	N	L	L	K	D	D	V	D	A	H	C	A
Template Known Secondary structure		T	T	.	.	.																S	T	T							.	.				T	S		T	T	S	G	G	G											G	G	G			T	T								T	T		B		T	T
Template Predicted Secondary structure				.	.	.																									.	.
Template SS confidence
		88	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.
Query Sequence		A	Q	V	L	Y	A	L	W	L	G	A	N	L	Q	A	K	I	S	R	.	.	.	.	.	.	.	S	F	E	P	L	E	N	A	L	A	H	V	K	N	I	I
Query Conservation																					.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	S	F	F	A	X	X	V	F	P	F	I	V	P	E	N	L	L	E	R	V	G	I	E	L	T	P	D	F	L	Q	L	L	A	E	Q	N	T	R	L	L
Template Known Secondary structure															S								T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions