Job Description P67430 Confidence 99.78% Date Thu Jan 5 12:10:35 GMT 2012 Rank 91 Aligned Residues 167 % Identity 11% Template c3colB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of putative transcription regulator from2 lactobacillus plantarum Resolution 2.10 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		T	R	E	H	L	L	A	T	G	E	Q	L	C	L	Q	R	G	F	T	G	M	G	L	S	E	L	L	K	T	A	E	V	P	K	G	S	F	Y	H	Y	F	R	S	K	E	A	F	G	V	A	M	L	E	R	H	Y	A	A	Y	H	Q	R	L	.	T	E	L	L	Q	S	G	E	G	N	Y	R	D	R	I	L
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		K	Q	V	K	I	Q	D	A	V	A	A	I	I	L	A	E	G	P	A	G	V	S	T	T	K	V	A	K	R	V	G	I	A	Q	S	N	V	Y	L	Y	F	K	N	K	Q	A	L	I	D	S	V	Y	A	R	E	T	N	R	I	L	S	T	T	D	L	D	R	L	S	D	S	T	I	D	V	T	T	R	I	R
Template Known Secondary structure																			G	G	G											T	S							T	T			S																	S									T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	Y	Q	Q	T	L	N	Q	F	C	Q	H	G	T	I	S	G	C	L	T	V	K	L	S	A	E	V	C	D	L	S	E	D	M	R	S	A	M	D	K	G	A	R	G	V	I	A	L	L	S	Q	A	L	E	N	G	R	E	N	H	C	L	T	F	C	G	E	P	L	Q	Q	A	Q	V	L	Y	A	L	W
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		L	Y	V	Q	Q	V	Y	D	Y	S	L	A	N	P	D	S	L	T	I	I	Q	Q	I	K	A	L	N	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	V	A	N	L	L	T	A	A	I	D	A	K	V	I	K	Q	.	L	P	V	S	L	H	X	G	V	V	F	S	T	I
Template Known Secondary structure														S	T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S	B		S	.	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		L	G	A	N	L	Q	A	K	.	.	.	I	S	R	S	F	E	P	L	E	N	A	L	A	H	V	K	N	I	I
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		H	T	H	T	T	N	I	S	K	G	R	Y	A	Q	D	Q	Y	T	F	G	D	I	F	Q	X	I	W	D	A	X
Template Known Secondary structure										T	T	S	S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions