Job Description P67430 Confidence 99.75% Date Thu Jan 5 12:10:35 GMT 2012 Rank 99 Aligned Residues 172 % Identity 13% Template c2zcmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:biofilm operon icaabcd hth-type negative transcriptional PDBTitle: crystal structure of icar, a repressor of the tetr family Resolution 1.33 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	H	L	L	A	T	G	E	Q	L	C	L	Q	R	G	F	T	G	M	G	L	S	E	L	L	K	T	A	E	V	P	K	G	S	F	Y	H	Y	F	R	S	K	E	A	F	G	V	A	M	L	E	R	H	Y	A	A	Y	H	Q	R	L	T	E	L	L	Q	S	G	E	G	N	Y	R	D	R	I	L	A	Y
Query Conservation
Alig confidence																																																																		.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		K	D	K	I	I	D	N	A	I	T	L	F	S	E	K	G	Y	D	G	T	T	L	D	D	I	S	K	S	V	N	I	K	K	A	S	L	Y	Y	H	Y	D	N	K	E	E	I	Y	R	K	S	V	E	N	C	F	N	Y	F	I	D	F	X	X	R	.	.	.	.	.	N	Y	S	I	D	G	L	Y	Q	F	L
Template Known Secondary structure																		T	T	T										T	T			G	G	G	G	G	G	T		S	S																						T	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		Y	Q	Q	T	L	N	Q	F	C	Q	H	G	T	I	S	G	C	L	T	V	K	L	S	A	E	V	C	D	L	S	E	D	M	R	S	A	M	D	K	G	A	R	G	V	I	A	L	L	S	Q	A	L	E	N	G	R	E	N	H	C	L	T	F	C	G	E	.	.	P	L	Q	Q	A	Q	V	L	Y	A	L	W
Query Conservation																																																																				.	.
Alig confidence														.	.	.	.	.	.	.	.																																															.	.
Template Conservation														.	.	.	.	.	.	.	.
Template Sequence		F	K	F	I	F	D	V	D	E	R	Y	I	.	.	.	.	.	.	.	.	K	L	Y	V	Q	L	S	S	A	P	E	A	L	N	S	E	I	K	H	H	L	Q	E	I	N	T	T	L	H	D	E	L	I	K	Y	Y	D	P	T	H	I	A	L	D	K	E	D	F	I	N	X	I	L	X	F	L	E	T	W	Y
Template Known Secondary structure								S						.	.	.	.	.	.	.	.					G	G	G	G	S		G	G	G																				G	G	G			T	T	T	B	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	A	N	L	Q	A	K	I	S	R	S	F	E	P	L	E	N	A	L	A	H	V	K	N	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	A	S	F	S	Q	K	F	G	I	I	E	D	S	K	N	R	F	K	D	Q	V	Y	S	L	L
Template Known Secondary structure													G	G	G
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions