Job Description P33643 Confidence 96.00% Date Thu Jan 5 11:52:28 GMT 2012 Rank 40 Aligned Residues 74 % Identity 22% Template c2xzmW_ PDB info PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Resolution 3.93 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																			.										.	.
Query SS confidence																			.										.	.
Query Sequence		Q	L	G	Q	R	L	D	Q	A	L	A	E	M	F	P	D	Y	.	S	R	S	R	I	K	E	W	I	.	.	L	D	Q	R	V	L	V	N	G	K	V	C	D	K	P	K	E	K	V	L	G	G	E	Q	V	A	I	N	A	E	I	E	E	E	A	R	F	E	P	Q	D	I	P	L	D	I	V	Y	E	D	E
Query Conservation																			.										.	.
Alig confidence																			.										.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	S	L	P	L	S	V	L	L	K	E	R	L	N	Y	A	L	N	G	R	D	V	T	L	I	L	N	D	K	E	Q	N	V	F	V	D	G	K	V	R	R	D	K	G	Y	P	T	G	L	M	D	V	V	R	I	.	.	.	.	.	.	.	.	.	.	E	K	T	D	Q	S	F	R	I	L	Y	D	T	K
Template Known Secondary structure		S	S									T	T	T	T		S			S								T	T	S	T	T						T	T						T	T					T	T						.	.	.	.	.	.	.	.	.	.	G	G	G	T									S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.											.	.	.	.	.	100	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	I	I	I	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	F	V	L	K	S
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions