Job Description P33643 Confidence 100.00% Date Thu Jan 5 11:52:28 GMT 2012 Rank 5 Aligned Residues 212 % Identity 35% Template c2i82D_ PDB info PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure Resolution 2.05 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	R	F	E	P	Q	D	I	P	L	D	I	V	Y	E	D	E	D	I	I	I	I	N	K	P	R	D	L	V	V	H	P	G	A	G	N	P	D	G	T	V	L	N	A	L	L	H	Y	Y	P	P	I	A	D	V	P	R	A	G	I	V	H	R	L	D	K	D	T	T	G	L	M	V	V	A	K	T	V	P
Query Conservation
Alig confidence																																																				.	.	.	.	.
Template Conservation																																																				.	.	.	.	.
Template Sequence		E	N	Y	N	P	P	Q	E	P	W	L	V	I	L	Y	Q	D	D	H	I	X	V	V	N	K	P	S	G	L	L	S	V	P	G	R	L	E	E	H	K	D	S	V	X	T	R	I	Q	R	D	.	.	.	.	.	Y	P	Q	A	E	S	V	H	R	L	D	X	A	T	S	G	V	I	V	V	A	L	T	K	A
Template Known Secondary structure								S	S	S									S	S								T	T	S	B	S	S			S	S	G	G	G			B						T	T	T	.	.	.	.	.	S	T	T				S	S				S	S									S	S
Template Predicted Secondary structure																																																				.	.	.	.	.
Template SS confidence
		904	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.						.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																															.														.																									.
Query SS confidence																															.														.																									.
Query Sequence		A	Q	T	R	L	V	E	S	L	Q	R	R	E	I	T	R	E	Y	E	A	V	A	I	G	H	M	T	A	G	.	G	T	V	D	E	P	I	S	R	H	P	T	K	.	R	T	H	M	A	V	H	P	M	G	K	P	A	V	T	H	Y	R	I	M	E	H	F	R	.	V	H	T	R	L	R	L	R	L	E	T
Query Conservation																															.														.																									.
Alig confidence																															.														.																									.
Template Conservation
Template Sequence		A	E	R	E	L	K	R	Q	F	R	E	R	E	P	K	K	Q	Y	V	A	R	V	W	G	H	P	S	P	A	E	G	L	V	D	L	P	L	I	C	D	W	P	N	R	P	K	Q	K	V	C	Y	E	T	G	K	P	A	Q	T	E	Y	E	V	V	E	Y	A	A	D	N	T	A	R	V	V	L	K	P	I	T
Template Known Secondary structure												T	T		S										S			S	S	S												G	G	G	T	T						T	T	T		B													T	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		979	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	T	H	Q	I	R	V	H	M	A	H	I	T	H	P	L	V	G	D	P	V	Y	G	G	R	P	R	P	P	K	G	A	S	E	A	F	I	S	T	L	R	K	F	D	R	Q	A	L	H	A	T	M	L	R	L	Y	H	P	I	S	G	I	E	M	E	W	H	A	P	I	P
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	S	H	Q	L	R	V	H	X	L	A	L	G	H	P	I	L	G	D	R	F	Y	A	S	P	E	A	R	A	X	A	.	.	.	.	.	.	.	.	.	.	.	.	P	R	L	L	L	H	A	E	X	L	T	I	T	H	P	A	Y	G	N	S	X	T	F	K	A	P	A	D
Template Known Secondary structure				T	T										T			B	T	T		T	T	T	S						T	T		.	.	.	.	.	.	.	.	.	.	.	.	S	S													T	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1059	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090													.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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