Job Description P31665 Confidence 36.76% Date Thu Jan 5 11:48:27 GMT 2012 Rank 64 Aligned Residues 72 % Identity 15% Template c3mzyA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a Resolution 2.50 Å

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		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	G	V	L	R	D	R	E	T	G	G	E	S	M	M	T	L	A	Q	W	F	E	E	K	G	I	E	K	G	I	Q	Q	G	R	Q	E	V	S	Q	E	F	A	Q	R	L	L	S	K	G	M	S	R	E	D	V	A	E	M	A	N	L	P	L	A	E	I	D	K	V	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	E	X	I	S	A	I	R	K	A	N	T	Q	K	E	E	A	Y	L	L	K	E	E	I	E	E	F	K	K	F	S	E	N	N	F	S	K	F	E	K	E	V	L	T	Y	L	I	R	G	Y	S	Y	R	E	I	A	T	I	L	S	K	N	L	K	S	I	D	N	T	I	Q
Template Known Secondary structure																																					S												T	T	T											T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions