Job Description P77397 Confidence 99.91% Date Thu Jan 5 12:28:35 GMT 2012 Rank 32 Aligned Residues 282 % Identity 16% Template c3nrnA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pf1083; PDBTitle: crystal structure of pf1083 protein from pyrococcus furiosus,2 northeast structural genomics consortium target pfr223 Resolution 2.10 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	V	A	I	A	G	A	G	P	V	G	L	M	M	A	N	Y	L	G	Q	M	G	I	D	V	L	V	V	E	K	L	D	K	L	I	D	Y	P	R	A	I	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	E	A	L	R	T	M	Q	S	V	G	L	V	D	D	V	L	P
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation																																																																												.	.	.	.
Template Sequence		X	R	A	V	V	V	G	A	G	L	G	G	L	L	A	G	A	F	L	A	R	N	G	H	E	I	I	V	L	E	K	S	A	X	I	G	G	R	F	T	N	L	P	Y	K	G	F	Q	L	S	T	G	A	L	H	X	I	P	H	G	E	D	G	P	L	A	H	L	L	R	I	L	G	A	.	.	.	.	K	V
Template Known Secondary structure								S		S													T	T								S	S	S	S	S		T	T	S	S					T	T					S	S	S		S			T	T	T	T	S	S										T		.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	T	T	P	W	H	A	M	R	F	L	T	P	K	G	R	C	F	A	D	I	Q	P	M	T	D	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	V	N	S	N	P	K	G	K	I	L	W	E	G	K	I	F	H	Y	R	E	S	W	K	F	L	S	K	L	L	A	E	I	R	X	N	K	L	P	K	E	E	I	P	A	D	E	W	I	K	E	K	I	G	E	N	E	F	L	L	S	V	L	E	S	F	A	G	W	A	D	S	V	S	L	S	D	L	T
Template Known Secondary structure							S	S	S						T	T					G	G	G	G	G	G	G										T	T							S	B									T																			S	S		G	G	G	S	B
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
																107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	W	P	R	R	N	A	F	I	Q	P	Q	V	D	A	V	M	L	E	G	V	S	R	F	P	N	V	R	C	L	F	S	R	E	L	E	A	F	S	Q	Q	D	D	E	V	T	L	H	L	K	T	A	E	G	Q	R	E	I	V	K	A	Q	W	L	V	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																						.	.	.	.	.	.
Template Conservation																																									.																						.	.	.	.	.	.
Template Sequence		A	L	E	L	A	K	E	I	R	A	A	L	R	W	G	G	P	G	L	I	R	G	G	C	K	A	V	I	D	E	L	E	R	I	I	X	E	N	K	.	G	K	I	L	T	R	K	E	V	V	E	I	N	I	E	E	K	K	V	Y	T	.	.	.	.	.	.	R	D	N	E	E	Y	S	F	D	V	A	I	S
Template Known Secondary structure																	S					T	T															T	T	T	.					S	S								T	T	T	T					.	.	.	.	.	.	T	T							S
Template Predicted Secondary structure																																									.																						.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.										.	.	230	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.
Query Sequence		C	D	G	G	A	S	F	V	R	R	T	L	N	V	P	F	.	.	.	.	.	.	.	E	G	K	T	A	P	N	Q	W	I	V	V	D	I	A	N	D	P	L	S	T	P	H	I	Y	L	C	C	D	P	V	R	P	Y	V	S	A	A	L	.	.	.	.	.	.	.	.	.	P	H	A	V	R	R	F	E	F
Query Conservation																		.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	G	V	R	E	T	V	K	L	I	G	R	D	Y	F	D	R	D	Y	L	K	Q	V	D	S	I	E	P	S	E	G	I	K	F	N	L	A	V	P	G	E	P	R	I	G	N	T	I	V	F	T	P	G	L	X	I	N	G	F	N	E	P	S	A	L	D	K	S	L	A	R	E	G	Y	T	L	I	X	A
Template Known Secondary structure			S											G	G	G	S										T															S	S		S	S		S	S					T	T	S	S	S						G	G	G	T		G	G	G	S		T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	M	P	G	E	T	E	E	Q	L	R	E	P	Q	N	M	R	K	L	L	S	K	V	L	P	N	P	D	N	V	E	L	I	R	Q	R	V	Y	T	H	N	A	R	L	A	Q	R	F	R	I	D	R	V	L	L	A	G	D	A	A	H	I	M	P	V	W	Q	G	Q	G	Y	N	S	G	M	R	D	A	F
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.
Template Sequence		H	X	A	L	K	N	G	N	V	K	K	A	I	E	K	G	W	E	E	L	L	E	I	F	P	.	.	.	.	.	.	.	.	.	.	E	G	E	P	L	L	A	Q	V	Y	H	I	E	W	P	L	N	E	V	L	V	V	G	D	G	Y	R	P	P	G	G	I	E	V	D	G	I	A	L	G	V	X	K	A	L
Template Known Secondary structure						T	T																			T	.	.	.	.	.	.	.	.	.	.	T																S	S					S	T	T				T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.											.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		317	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		401	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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