Job Description P77397 Confidence 99.69% Date Thu Jan 5 12:28:35 GMT 2012 Rank 35 Aligned Residues 361 % Identity 12% Template c3da1A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167. Resolution 2.70 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		V	N	H	S	V	Q	V	A	I	A	G	A	G	P	V	G	L	M	M	A	N	Y	L	G	Q	M	G	I	D	V	L	V	V	E	K	L	D	K	L	I	D	Y	P	R	A	I	G	.	.	.	.	.	I	D	D	E	A	L	R	T	M	Q	S	V	G	L	V	D	D	V	L	P	H	T	T	P	W	H	A	M
Query Conservation																																																	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.
Template Conservation
Template Sequence		S	E	K	Q	L	D	L	L	V	I	G	G	G	I	T	G	A	G	I	A	L	D	A	Q	V	R	G	I	Q	T	G	L	V	E	X	N	D	F	A	S	G	T	S	S	R	S	T	K	L	V	H	G	V	G	K	E	R	A	I	V	Y	E	N	A	P	H	V	T	T	P	E	W	X	L	L	P	I	F	K	R
Template Known Secondary structure		T	T	S										S												T	T	T								S	S	S	T	T		S	G	G	G	S	S																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.
Predicted Secondary structure																												.	.	.																																														.	.
Query SS confidence																												.	.	.																																														.	.
Query Sequence		R	F	L	T	P	K	G	R	C	F	A	D	I	Q	P	M	T	D	E	F	G	W	P	R	R	N	.	.	.	A	F	I	Q	P	Q	V	D	A	V	M	L	E	G	V	S	R	F	P	N	V	R	C	L	F	S	R	E	L	E	A	F	S	Q	Q	D	D	E	V	T	L	H	L	K	T	.	.	A	E	G	Q
Query Conservation																												.	.	.																																														.	.
Alig confidence																												.	.	.																				.																										.	.
Template Conservation																																																		.
Template Sequence		Y	X	L	N	E	K	Q	T	L	E	K	E	P	L	L	R	K	E	N	L	K	G	G	G	I	Y	V	E	Y	R	T	D	D	A	R	L	T	L	E	I	X	K	E	A	V	A	R	G	.	A	V	A	L	N	Y	X	K	V	E	S	F	I	Y	D	Q	G	K	V	V	G	V	V	A	K	D	R	L	T	D	T
Template Known Secondary structure														T	T	S			T	T																												T	T	.						S										T	T										T	T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.
Predicted Secondary structure																			.																																																										.	.	.
Query SS confidence																			.																																																										.	.	.
Query Sequence		R	E	I	V	K	A	Q	W	L	V	A	C	D	G	G	A	S	.	F	V	R	R	T	L	N	V	P	F	E	G	K	T	A	P	N	Q	W	I	V	V	D	I	A	N	D	P	L	S	T	P	H	I	Y	L	C	C	D	P	V	R	P	Y	V	S	A	A	L	P	H	A	V	R	R	F	E	.	.	.	F	M
Query Conservation																			.																																																										.	.	.
Alig confidence																			.																																																										.	.	.
Template Conservation
Template Sequence		T	H	T	I	Y	A	K	K	V	V	N	A	A	G	P	W	V	D	T	L	R	E	K	D	R	S	K	H	G	K	Y	L	K	L	S	K	G	V	H	L	V	V	D	Q	S	R	F	P	L	R	Q	A	V	Y	F	D	T	E	S	D	G	R	X	I	F	A	I	P	R	E	G	K	T	Y	I	G	T	T	D	T
Template Known Secondary structure															G	G	G							T	T	T				S	S														G	G	G	S			S	S							S	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.								.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																										.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		V	M	P	G	E	T	E	E	Q	L	R	E	P	Q	N	M	R	K	L	L	S	K	V	L	.	.	.	.	.	.	.	P	N	P	D	N	V	E	L	I	R	Q	R	V	Y	T	H	N	A	R	L	A	Q	R	F	R	I	D	R	V	L	L	A	G	D	A	A	H	I	M	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	D	K	D	I	A	S	P	R	X	T	V	E	D	R	D	Y	I	L	A	A	A	N	Y	X	F	P	S	L	R	L	T	A	D	D	V	E	S	S	W	A	G	L	R	P	L	I	H	E	D	E	I	F	F	S	D	S	G	L	I	S	I	A	G	G	K	L	T	G	Y	R	K	X	A	E	R	T	V	D
Template Known Secondary structure					S		T	T																					T	T					T	T	T																					S	S										S	T	T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
																		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.					.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	W	Q	G	Q	G	Y	N	S	G	M	R	D	A	F	N	L	A	W	K	L	A	L	V	I	Q	G	K	A	R	D	A	.	.	.	.	L	L	D	T	Y	Q	Q	E	R	R	D	H	A	K	A	M	I	D	L	S	V	T	A	G	N	V	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.								.
Template Conservation																																																														.
Template Sequence		A	V	A	Q	G	L	N	V	N	E	P	C	T	T	A	A	I	R	L	S	G	G	L	A	E	G	A	Q	G	F	P	R	F	L	D	E	A	S	R	K	G	A	K	L	G	F	D	A	D	E	V	R	R	L	A	K	L	Y	G	S	.	N	V	D	H	V	L	N	Y	A	Y	E	G	K	E	E	A	E	H	Y
Template Known Secondary structure								T							T	T	S				T	T			T	T		S	T	T														T	T	T														G	G	.	G											T							T
Template Predicted Secondary structure																																																														.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	P	K	R	W	Q	G	T	L	R	D	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	P	A	L	L	L	G	Q	L	Q	Y	G	V
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions