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Job DescriptionP77397
Confidence100.00%DateThu Jan 5 12:28:35 GMT 2012
Rank23Aligned Residues336
% Identity15%Templatec3atrA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:conserved archaeal protein; PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........60.........70.........80 .........90...
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Query Sequence  SVQVAIAGAGPVGLMMANYLGQMGIDVLVVEKLDKLIDYPRAIGIDDEALRTMQSVGLVDDVLPHT. TPWHAMRFLTPKG
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Template Sequence  KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGD. AVSKAHFDKLGMPYPKGEELENKINGIKLYSPDM
Template Known Secondary structure 
S

SSSSS


SS
GGGTT
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   5....10.........20.........30.........40......... 50.........60.........70.........80...
 
   94.....100.........110.........120.........130.........140.........150...... ...160.........170.
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Query Sequence  RCFADIQPMTDEFGWPRRNAFIQPQVDAVMLEGVSRFPNVRCLFSRELEAFSQQDDEVTLHLK. . TAEGQREIVKAQWLV
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Template Sequence  QTVWTVNG. . . . . . . . EGFELNAPLYNQRVLKEAQDRG. VEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVV
Template Known Secondary structure  S
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TT.
SSTTTTTT
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   84.....90. ........100.........110... ......120.........130.........140.........150....
 
   172.......180....... ..190.........200.........210...... ...220.........230.........240
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Query Sequence  ACDGGASFVRRTLNVP. . . . . . FEGKTAPNQWIVVDIANDPLSTPHIYLCC. . . . . DPVRPYVSAALPHAVRRFEFMVMP
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Template Sequence  EATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQG
Template Known Secondary structure 

GGG
TTGGGS
TTSGGG



GGGSS

TTTT

TTTSTTS
TTS
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   155....160.........170.........180.........190.........200.........210.........220.........230....
 
   241........250.........260........ .270.........280.........290.........300.........310.........
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Query Sequence  GETEEQLREPQNMRKLLSKVLPNPDNVE. LIRQRVYTHNARLAQRFRIDRVLLAGDAAHIMPVWQGQGYNSGMRDAFNLA
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Template Sequence  GMGYP. . SIHEYYKKYLDKYAPDVDKSKLLVKGGALVPTRRPLYTMAWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAA
Template Known Secondary structure  SS


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   235.... 240.........250.........260.........270.........280.........290.........300.........310..
 
   320...... ...330.........340.........350.........360..
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Query Sequence  WKLALVI. QGKARDALLDTYQQERRDHAKAMIDLSVTAGNVLAP
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Template Sequence  KAILSAFETGDFSASGLWDMNICYVNEYGAKQASLDIFRRFLQK
Template Known Secondary structure  T

STTTTTTTT
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   313......320.........330.........340.........350......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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