Job Description P77397 Confidence 99.47% Date Thu Jan 5 12:28:35 GMT 2012 Rank 46 Aligned Residues 307 % Identity 13% Template c2olnA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nikd protein; PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution Resolution 1.15 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.																	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	S	V	Q	V	A	I	A	G	A	G	P	V	G	L	M	M	A	N	Y	L	G	Q	M	G	I	D	V	L	V	V	E	K	L	D	K	L	I	D	Y	P	R	A	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	D	E	A	L	R	T	M	Q	S	V	G	L	V	D	D	V	L
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																																																																											.	.
Template Sequence		E	S	Y	D	V	V	V	V	G	G	G	P	V	G	L	A	T	A	W	Q	V	A	E	R	G	H	R	V	L	V	L	E	R	H	T	F	F	N	E	N	G	G	T	S	G	A	E	R	H	W	R	L	Q	Y	T	Q	E	D	L	F	R	L	T	L	E	T	L	P	L	W	R	A	L	.	.	E	S	R	C	E
Template Known Secondary structure												S													T	T								S	S		T	T		S	S	S	S			S	S						S			S	S																		.	.					T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.																																		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	H	T	T	P	W	H	A	M	R	F	L	T	P	K	G	R	C	F	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	P	M	T	D	E	F	G	W	P	R	R	N	A	F	I	Q	P	Q	V	D	A	V	M	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	L	I	H	E	I	G	S	L	W	F	G	D	T	D	V	V	T	N	E	G	Q	I	S	G	T	A	A	M	M	D	K	L	S	V	R	Y	E	W	L	K	A	T	D	I	E	R	R	F	G	F	R	G	L	P	R	D	Y	E	G	F	L	Q	P	D	G	G	T	I	D	V	R	G	T	L	A	A	L	F
Template Known Secondary structure																S	S			B	T	T	B												T	T																			S			T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	V	S	R	F	P	N	V	R	C	L	F	S	R	E	L	E	A	F	S	Q	Q	D	D	E	V	T	L	H	L	K	T	A	E	G	Q	R	E	I	V	K	A	Q	W	L	V	A	C	D	G	G	A	S	F	V	R	R	T	L	N	V	P	F	E	G	K	T	A	P	N	Q	W	I	V	V	D	I	A	N
Query Conservation
Alig confidence									.																											.	.	.	.
Template Conservation									.																											.	.	.	.
Template Sequence		T	L	A	Q	A	A	G	.	A	T	L	R	A	G	E	T	V	T	E	L	V	P	D	A	D	G	V	S	V	T	T	D	R	G	.	.	.	.	T	Y	R	A	G	K	V	V	L	A	C	G	P	Y	T	N	D	L	L	E	P	L	G	A	R	L	A	Y	S	V	Y	E	M	A	I	A	A	Y	R	Q	A	T
Template Known Secondary structure							T	T	.						S										T	T							S	S		.	.	.	.												G	G	G						G	G	G	T																	B		S
Template Predicted Secondary structure									.																											.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220								.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.										250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		D	P	L	S	T	P	H	I	Y	L	C	C	D	P	V	R	.	.	.	.	.	.	.	P	Y	V	S	A	A	L	P	H	A	V	R	R	F	E	F	M	V	M	P	G	E	T	E	E	Q	L	R	E	.	.	.	.	.	.	.	.	.	P	Q	N	M	R	K	L	L	S	K	V	L	P	N	P	D	N	V	E
Query Conservation																		.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	T	E	A	P	F	W	F	A	F	Q	Q	P	T	P	Q	D	T	N	L	F	Y	G	F	G	H	N	P	W	A	P	G	E	F	V	R	C	G	P	D	F	E	V	D	P	L	D	H	P	S	A	A	T	G	V	A	D	R	R	Q	M	D	R	L	S	G	W	L	R	D	H	L	P	T	V	D	P	D	P
Template Known Secondary structure				S													S	S	S											S	S	S	S	S	S											S			S	S	G	G	G			S	S																		T	T	B		S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																				.	.									.
Query SS confidence																																				.	.									.
Query Sequence		L	I	R	Q	R	V	Y	T	H	N	A	R	L	A	Q	R	F	R	I	D	R	V	L	L	A	G	D	A	A	H	I	M	P	V	.	.	W	Q	G	Q	G	Y	N	S	.	G	M	R	D	A	F	N	L	A	W	K	L	A	L	V	I	Q	G	K	A	R	D
Query Conservation																																				.	.									.
Alig confidence											.	.	.	.	.																					.	.									.
Template Conservation											.	.	.	.	.
Template Sequence		V	R	T	S	T	C	L	A	V	.	.	.	.	.	L	P	T	D	P	E	R	Q	F	F	L	G	T	A	R	D	L	M	T	H	G	E	K	L	V	V	Y	G	A	G	W	A	F	K	F	V	P	L	F	G	R	I	C	A	D	L	A	V	E	D	S	T	A
Template Known Secondary structure		S									.	.	.	.	.			S	S	T	T								S	T	T	T	S	T	T	G	G	G							S	S		G	G	G															S			S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.						.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions