Job Description P77397 Confidence 98.85% Date Thu Jan 5 12:28:35 GMT 2012 Rank 124 Aligned Residues 157 % Identity 23% Template c2eq7B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo Resolution 1.80 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	V	A	I	A	G	A	G	P	V	G	L	M	M	A	N	Y	L	G	Q	M	G	I	D	V	L	V	V	E	K	L	D	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	D	L	L	V	I	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	M	K	V	G	V	V	E	K	E	K	A	L	G	G	T	C	L	R	V	G	C	I	P	S	K	A	L	L	E	T	T	E	R	I	Y	E	A	K	K	G	L	L	G	A	K	V	K	G	V	E	L	D	L	P	A	L	M
Template Known Secondary structure										S													T	T								S	S	S	S	S	S							S																						T	T				S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
			51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure		.																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	I	D	Y	P	R	A	I	G	I	D	D	E	A	L	R	T	M	Q	S	V	G	L	V	D	D	V	L	P	H	T	T	P	W	H	A	M	R	F	L	T	P	K	G	R	C	F	A	D	I	Q	P	M	T	D	E	F	G	W	P	R	R	N	A	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	H	K	D	K	V	V	Q	A	N	T	Q	G	V	E	F	L	F	K	K	N	G	I	A	R	H	Q	G	T	A	R	F	L	S	E	R	K	V	L	V	E	E	T	G	E	E	L	E	A	R	Y	I	L	I	A	T	G	S	A	P	L	I	P	P	W	A	Q	V	D	Y	E	R	V	V	T	S	T	E	A	L
Template Known Secondary structure																						T	T						S					S	S	S	S					T	T	T	T																				T	T	B				S	S	S								T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
																																															116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	Q	V	D	A	V	M	L	E	G	V	S	R	F	P	N	V	R	C	L	F	S	R	E	L	E	A	F	S	Q	Q	D	D	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																															.
Template Sequence		S	F	P	E	V	P	K	R	L	I	V	V	G	G	G	V	I	G	L	E	L	G	V	V	W	H	R	L	G	A	E	V	I	V	L	E	Y	M	D	R	I	L	P	T	M	D	L	E	V	S	R	A	A	E	R	V	F	K	K	Q	G	.	L	T	I	R	T	G	V	R	V	T	A	V	V	P	E	A	K	G
Template Known Secondary structure		S		S	S			S								S													T	T								S	S	S	S	S		T	T	S																T	.						S										T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	L	H	L	K	T	A	E	G	Q	R	E	I	V	K	A	Q	W	L	V	A	C	D	G	G	A
Query Conservation
Alig confidence										.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		A	R	V	E	L	E	G	G	.	.	.	.	E	V	L	E	A	D	R	V	L	V	A	V	G	R	R
Template Known Secondary structure							T	T	S	.	.	.	.						S						S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions