Job Description P77397 Confidence 99.24% Date Thu Jan 5 12:28:35 GMT 2012 Rank 81 Aligned Residues 169 % Identity 19% Template c1yq4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone Resolution 2.33 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	I	Q	P	A	V	N	H	S	V	Q	V	A	I	A	G	A	G	P	V	G	L	M	M	A	N	Y	L	G	Q	M	G	I	D	V	L	V	V	E	K	L	D	K	L	I	D	Y	P	R	A	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	Q	Y	P	V	V	D	H	E	F	D	A	V	V	V	G	A	G	G	A	G	L	R	A	A	F	G	L	S	E	A	G	F	N	T	A	C	V	T	K	L	F	P	T	R	S	H	T	V	A	A	Q	G	G	I	N	A	A	L	G	N	M	E	D	D	N	W	R	W	H	F	Y	D	T	V	K	G	S	D
Template Known Secondary structure				S	S								S							S													T	T								S	S		G	G	G	S	G	G	G	G			S								S	S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
															59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	D	E	A	L	R	T	M	Q	S	V	G	L	V	D	D	V	L	P	H	T	T	P	W	H	A	M	R	F	L	T	P	K	G	R	C	F	A	D	I	Q	P	M	T	D	E	F	G	W	P	R	R	N	A	F	I	Q	P	Q	V	D	A	V	M	L	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		W	L	G	D	Q	D	A	I	H	Y	M	T	E	Q	A	P	A	A	V	I	E	L	E	N	Y	G	M	.	.	.	.	.	P	F	S	R	T	E	E	G	K	I	Y	Q	R	A	F	G	G	Q	S	L	Q	F	G	K	G	G	Q	A	H	R	C	C	C	V	A	D	R	T	G	H	S	L	L	H	T	L	Y	G
Template Known Secondary structure		T		S																						T	T		.	.	.	.	.				B		T	T	S	S	B						T	T		B	S	G	G	G	T	S		B							S	T	T
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.						.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		G	V	S	R	F	P	N	V	R	C	L	F	S	R	E	L	E	A	F	S	Q	Q	D	D	E	V	T	.	.	L	H	L	K	T	A	E	G	Q	R	E	I	V	K	A	Q	W	L	V	A	C	D	G	G	A	S	F	V
Query Conservation																													.	.
Alig confidence								.																					.	.
Template Conservation								.
Template Sequence		R	S	L	R	Y	D	.	T	S	Y	F	V	E	Y	F	A	L	D	L	L	M	E	N	G	E	C	R	G	V	I	A	L	C	I	E	D	G	T	I	H	R	F	R	A	K	N	T	V	I	A	T	G	G	Y	G	R	T
Template Known Secondary structure				T	T	S		.						T										T	T										T	T	T	T								S										G	G	G
Template Predicted Secondary structure								.
Template SS confidence
		164	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions