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Job DescriptionP65807
Confidence100.00%DateThu Jan 5 12:10:18 GMT 2012
Rank6Aligned Residues381
% Identity15%Templatec3pfeA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a m20a metallo peptidase (dape, lpg0809) from2 legionella pneumophila subsp. pneumophila str. philadelphia 1 at 1.503 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.... .....20.........30..... ....40.........50.........60 .........70
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Query Sequence  KLILEKA. KDYQADMTRFLRDMVAIPSES. . . . . . . . . . CDEKRVVHRIKEEMEKVGFDKVEID. . . . . . PMGNVLGYIG
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Template Sequence  QGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYXEQAVNHIANWCKSHAPKGXTLEIVRLKNRTPLLFXEIP
Template Known Secondary structure  TT


B
GGG
TT
T

TT


TTS


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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   71. .......80.........90.........100.........110.........120.........130.........140.........
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Query Sequence  HG. PRLVAMDAHIDTVGIGNIKNWDFDPYEGMETDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEE
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Template Sequence  GQIDDTVLLYGHLDKQPEXSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY. PRCILIIEACEE
Template Known Secondary structure 
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B



S


TT
BTTB
TTSTT




TT


.S
GG
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   85....90.........100.........110.........120.........130.........140.........150. ........160...
 
   150.........160. ........170.. .......180.........190...... ...200... ......210.........
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Query Sequence  DCDGLCWQYIIE. . QSGIRPEFVVS. . . . . TEPTDCQVYRGQRGRMEIRIDVQG. . VSCHGSA. PERGDNAIFKMGPILG
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Template Sequence  SGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWXTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLIS
Template Known Secondary structure  GTSTT


S

B
S
SSS

S
SS
B
TTTS

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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   220. ........230.........240........
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Query Sequence  EL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QELSQRLGYDEFLGKGTLTVSEIFFTS
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Template Sequence  RIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIA
Template Known Secondary structure  B
TTT

B

GGG




GGGGTTTS


TT


S
S
TS
S


TT
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   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   249250.........260.........270.........280.........290.........300.........310.........320........
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Query Sequence  PSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVEEDHFTVKAL
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Template Sequence  DAGNVXRPVTSLKLSXRLPPLVDPEAASVAXEKALTQ. . . . . . . . . . NPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAA
Template Known Secondary structure  T

S
B
S
TT

S..........S
GGG

S

B






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   324.....330.........340.........350.........360 .........370.........380.........390...
 
   329330.........340.........350........ .360.........370 .........380.........390.........
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Query Sequence  VNAYEGLFGKAPVVDKWTFSTNGVSIMGRH. . GIPVIGFGPGKE. PEAHAPNEKTWKSHLVTCAAMYAAIPLSW
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Template Sequence  SEASXTYYDKPAAYXGEGGTIPFXSXLGEQFPKAQFXITGVLGPHSNAHGPNEFLHLDXVKKLTSCVSYVLYSF
Template Known Secondary structure  SS

SS


TT


B
TT

TTSTT
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   394.....400.........410.........420.........430.........440.........450.........460.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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