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Job DescriptionP65807
Confidence100.00%DateThu Jan 5 12:10:18 GMT 2012
Rank15Aligned Residues325
% Identity26%Templatec3khzA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30........ .40.........50.........60.........70........
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Query Sequence  LEKAKDYQADMTRFLRDMVAIPSESCDE. . . . . . . . . . . . KRVVHRIKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAM
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Template Sequence  KEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDH. IAGRIEAGKGNDVLGI
Template Known Secondary structure  TTTS

B

TTS

SSSTT
TT

TT.T
SS
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   3......10.........20.........30.........40.........50.........60..... ....70.........80.
 
   7980.........90.........100.........110.........120.........130.........140.........150........
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Query Sequence  DAHIDTVGIGNIKNWDFDPYEGMETDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQY
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Template Sequence  LCHVDVVPAG. . DGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRY
Template Known Secondary structure 

B



..TT
SS
TTS

SSSTTSTTTTT


SS

TT



TTS
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   82.......90. ........100.........110.........120.........130.........140.........150.........
 
   159160.........170......
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Query Sequence  IIEQSGIRPEFVVSTEPT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FKT. . EEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQ
Template Known Secondary structure  ..S


S
TT
SS
S


B










S
SSSB


SS
S
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   160.. .......170.........180.........190.........200.........210.........220.........230.......
 
   177..180.........190.........200.........210.........220.........
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Query Sequence  . . . . . . . . DCQVYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILGELQELSQRLG. . . . . . . . . . . . . . . . . . .
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Template Sequence  DFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMG
Template Known Secondary structure  TT

TT
B

BTTS
TTSB
TTS
B
TTT
TTSGGGT
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   230.........240.........250.........260.........270.........280.........290.........300......
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Query Sequence  . . . YDEFLGKGTLTVSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRPSWTGLV
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Template Sequence  MKFHTDVMGDVTTNIGVIT. . . . . . YDNENAGLFGINLAYPEGFEFEKAMDRFANEIQQY. . . . . . . . . . . . . . . . . GFE
Template Known Secondary structure 


TTT
......TTT
TT

TGGG.................T
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   318.320.........330...... ...340.........350.........360.........370. ...
 
   307..310.........320.........330.........340.........350.........360.........370.........380......
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Query Sequence  YPTECYFPTWKVEEDHFTVKALVNAYEGLFGKAPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKSHLV
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Template Sequence  VKLGKVQPPHYVDKNDPFVQKLVTAYRN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QTHQKNEYITKKQLF
Template Known Secondary structure 

B

GGG
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SS
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   375....380.........390.........400.. .......410.......
 
   387..390.........400
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Query Sequence  TCAAMYAAIPLSWL
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Template Sequence  NATSIYLEAIYSLC
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   453......460......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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