 |
Job Description | P65807 | Confidence | 97.82% | Date | Thu Jan 5 12:10:18 GMT 2012 |
Rank | 82 | Aligned Residues | 83 |
% Identity | 10% | Template | c2ijzF_ |
PDB info |
PDB header:hydrolase | Chain: F: PDB Molecule:probable m18-family aminopeptidase 2; |
PDBTitle: crystal structure of aminopeptidase
|
Resolution | 3.00 Å |
|
 |
  |   |
313 | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | |
|
|
. | . | . | . | . | 350 | . | . | . | . | |
. | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  | . | . | . |  |
|
|
|
|  |  |  |  |  | . |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | P | T | W | K | V | E | E | D | H | F | T | V | K | A | L | V | N | A | Y | E | G | L | F | G | K | A | P | V | V | D | K | . |
. |
. |
W | T | F | S | T | N | G | V | S | I | . |
M | G | R | H | G | I | P | V | I | G | F | G | P | G | K | E | P | E | A | H | A | P | N | E | K | T | W | K | S | H | L | V | T | C |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   | . | . | . |   |   |
|   |   |
|   |   |   |   | . |   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |   |   |   |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|
| . |
|   |   |   |
|
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |
Template Sequence |   |
N | S | N | Q | R | Y | A | T | N | S | E | T | A | G | F | F | R | H | L | C | Q | D | S | E | V | P | V | Q | S | F | V | T | R | S | D | M | G | C | G | S | T | I | G | P | I | T | A | S | Q | V | G | V | R | T | V | D | I | G | L | . |
P | T | F | A | M | H | S | I | R | E | L | A | G | S | H | D | L | A | H | L |
Template Known Secondary structure |   |
| S | S | S |
|
| S |
|
|  |  |  |  | G | G | G | T |  |  |  |  |  | T |
|
|
|
|
| B |
|
|
|
| S | S |
|
|
|
|
|
|
| S | T | T | T | G | G | G | S | S |
|
|  |  |  |  |
|
| . |
|
|
| S |
| S | S | S | S |
|
|
|
| S | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|  | . |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
337 | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | |
. | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . |
  |
  |   |
389 | 390 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | M | Y | A | A | I | P |
Query Conservation |   |
  |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|   |
Template Sequence |   |
V | K | V | L | G | A | F | Y |
Template Known Secondary structure |   |
 | T | T |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
416 | . | . | . | 420 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|