Return to main results Retrieve Phyre Job Id

Job DescriptionP65807
Confidence100.00%DateThu Jan 5 12:10:18 GMT 2012
Rank9Aligned Residues375
% Identity20%Templatec1lfwA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:pepv; PDBTitle: crystal structure of pepv
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30......... 40.........50.........60.........70..
Predicted Secondary structure 








............










Query SS confidence 


































. . . . . . . . . . . .
































Query Sequence  IPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEK. . . . . . . . . . . . RVVHRIKEEMEKVGFDKVEIDPMGNVLGYIGHG
Query Conservation                         
  


 
  
 ............     
   
   
      
  


    
  
Alig confidence 


.






























............


















.












Template Conservation 
  . 
   
       
  
  

 


 
  
                  
       
     .             
Template Sequence  MDL. NFKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTEN. FANYAGRVNFGAG
Template Known Secondary structure 


.
TTTS

B

GGG

SSSTT
TT
.TTT


Template Predicted Secondary structure 


.




















.





Template SS confidence 















































































   1.. ......10.........20.........30.........40.........50.........60..... ....70........
 
   73......80.........90.........100... ......110.........120.........130.........140.........150.
Predicted Secondary structure 

















.























Query SS confidence 






























.















































Query Sequence  PRLVAMDAHIDTVGIGNIKNWDFDPYEGMET. DELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDC
Query Conservation     
 
 

 
 

      
   
      . 
 
 


  
 
      
 
   
          
       

  
Alig confidence 















..












.















































Template Conservation     


  
 



  ..  
   

             
  
 
        
   
          
       

 
Template Sequence  DKRLGIIGHMDVVPAG. . EGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETN
Template Known Secondary structure  SS

B



..S

SS
TTS

TT
STTSSSST


SSS
TTTT
Template Predicted Secondary structure 










..

































Template SS confidence 















































































   7980.........90.... .....100.........110.........120.........130.........140.........150......
 
   152.......160.........170.......
Predicted Secondary structure 











......................................................
Query SS confidence 

























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  DGLCWQYIIEQSGIRPEFVVSTEPTD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation                  
  
      ......................................................
Alig confidence 

























......................................................
Template Conservation    
                 
       
  
                        
                       
Template Sequence  WVGIDYYLKHEPTPDIVFSPDAEYPIINGEQGIFTLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVK
Template Known Secondary structure 
S


SSSSS







SB
SBTTB

S
S
Template Predicted Secondary structure 















































Template SS confidence 















































































   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   178.180.........190.........200.........210.........220........ .230.
Predicted Secondary structure  ..........














................


Query SS confidence  . . . . . . . . . .


















































. . . . . . . . . . . . . . . .


Query Sequence  . . . . . . . . . . CQVYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILGELQELSQRL. . . . . . . . . . . . . . . . GYD
Query Conservation  ..........  
     
             
      
  
       
  
       ................   
Alig confidence  ..........


















































................


Template Conservation                    
     
 
 
   

  
    


      
                             
Template Sequence  LAYESFLADKELDGSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKL
Template Known Secondary structure  T
TT
B

BTT
GGGSB
TTS
B
TTTT
TTSTTT
Template Predicted Secondary structure 




































Template SS confidence 















































































   237..240.........250.........260.........270.........280.........290.........300.........310......
 
   232.......240.........250.........260.........270.........280.........290.........300.........310.
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  EFLGKGTLTVSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTEC
Query Conservation              
  
    



  
     

             
       
                        
Alig confidence 





















































..................







Template Conservation                  
   
 

  
    


       
     
      ..................   
    
Template Sequence  GIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG. . . . . . . . . . . . . . . . . . ILDVTYNG
Template Known Secondary structure  T


TTT
TTS

TT

TT..................T
S
Template Predicted Secondary structure 

















..................
Template SS confidence 















































































   317..320.........330.........340.........350.........360.........370 ........
 
   312.......320.........330.........340.........350.........360.........370.........380.........390.
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  YFPTWKVEEDHFTVKALVNAYEGLFGKAPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKSHLVTCAAM
Query Conservation           
  
      
     
         
  
        
      


     

  
 
           
Alig confidence 










































..


































Template Conservation     
     
  
   
  
     
         




   ..                 
   
 
 
         
Template Sequence  FEEPHYVPGSDPMVQTLLKVYEKQTGKPGHEVVIGGGTYGRLF. . ERGVAFGAQPENGPMVMHAANEFMMLDDLILSIAI
Template Known Secondary structure 
B



TT





SS

GGGGS..TT



TT



TTSTT
Template Predicted Secondary structure 


















..















Template SS confidence 















































































   379380.........390.........400.........410.........420. ........430.........440.........450......
 
   392.......400...
Predicted Secondary structure 


Query SS confidence 











Query Sequence  YAAIPLSWLATE
Query Conservation      
   
  
Alig confidence 











Template Conservation      
  
    
Template Sequence  YAEAIYELTKDE
Template Known Secondary structure  S

Template Predicted Secondary structure 


Template SS confidence 











   457..460........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions