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Job DescriptionP33368
Confidence100.00%DateThu Jan 5 11:52:08 GMT 2012
Rank51Aligned Residues236
% Identity35%Templatec3ftpD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:3-oxoacyl-[acyl-carrier protein] reductase; PDBTitle: crystal structure of 3-ketoacyl-(acyl-carrier-protein)2 reductase from burkholderia pseudomallei at 2.05 a3 resolution
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  AQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLDLGNLPEGALALEKLIQRLGRI
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Template Sequence  KQVAIVTGASRGIGRAIALELARRGAMVIGTAT. TEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGAL
Template Known Secondary structure  T
S
SSTT
S.ST




TT
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   7..10.........20.........30......... 40.........50.........60.........70.........80.....
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  DVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALG
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Template Sequence  NVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPM. MKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVA
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GGG

T.T



T

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   86...90.........100.........110.........120.........130 .........140.........150.........160....
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  GLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIASLVVWLCSEGANYTTGQSLIVDG
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Template Sequence  GMTRALAREIGSRGITVNCVAPGFIDTDE. . . . . . . QQTALKTQIPLGRLGSPEDIAHAVAFLASPQAGYITGTTLHVNG
Template Known Secondary structure  GGGT

SB



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T
TT
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SGGGTT

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   165....170.........180.........190... ......200.........210.........220.........230.......
 
   242....
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Query Sequence  GFMLA
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Template Sequence  GMFMS
Template Known Secondary structure  TSS

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   245....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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