Job Description P11880 Confidence 100.00% Date Thu Jan 5 11:33:00 GMT 2012 Rank 8 Aligned Residues 394 % Identity 21% Template c3uagA_ PDB info PDB header:ligase Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase Resolution 1.77 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	S	V	T	L	S	Q	L	T	D	I	L	N	G	E	L	Q	G	A	D	I	T	L	D	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	L	D	I	D	L	P	Q	L	I	V
Query Conservation
Alig confidence																																			.								.	.	.				.	.	.	.	.	.	.																							.	.	.	.
Template Conservation																																			.								.	.	.				.	.	.	.	.	.	.																							.	.	.	.
Template Sequence		L	T	G	L	S	C	V	D	F	F	L	A	R	G	V	T	P	R	V	M	D	T	R	M	T	P	P	G	L	D	K	L	P	.	E	A	V	E	R	H	T	.	.	.	G	S	L	.	.	.	.	.	.	.	N	D	E	W	L	M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	.	.	.	.
Template Known Secondary structure													T	T	T								S	S	S	S		T	T	G	G	G	S		.	T	T	S					.	.	.	S	S		.	.	.	.	.	.	.						T	T		S						T	T	S		T	T	S		.	.	.	.
Template Predicted Secondary structure																																			.								.	.	.				.	.	.	.	.	.	.																							.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.				.	.	.								.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.
Query Sequence		K	D	T	R	L	A	F	G	E	L	.	.	.	.	.	.	.	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	M	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	N	L	N	N	D	I	G	V	P	M	T	L	L	R	L	T	P	E	Y	D
Query Conservation												.	.	.	.	.	.	.
Alig confidence		.	.									.	.	.	.	.	.	.																																													.	.	.	.									.
Template Conservation		.	.																																																												.	.	.	.									.
Template Sequence		.	.	S	L	S	A	A	A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	R	E	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	V	G	G	N	.	.	.	.	I	G	L	P	A	L	M	L	.	L	D	D	E	C	E
Template Known Secondary structure		.	.								T	T																S								S	S																T	T								T	.	.	.	.	T	S	S		G	G	G	G	.			T	T
Template Predicted Secondary structure		.	.																																																												.	.	.	.									.
Template SS confidence
				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.		.	.	.	150	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	A	A	A	H	L	E	G	F	G	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	M	N	A	D	N	N	D	W	L	N	W	Q	S	V	I	G	S
Query Conservation
Alig confidence													.	.	.	.																																							.	.	.																			.	.	.	.	.	.
Template Conservation													.	.	.	.																																							.	.	.																			.	.	.	.	.	.
Template Sequence		L	Y	V	L	E	L	S	S	F	Q	L	.	.	.	.	E	T	T	S	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	F	G	L	Q	Q	Y	R	A	A	L	R	I	Y	.	.	.	E	N	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	.	.	.	.	.	.
Template Known Secondary structure													.	.	.	.		T							S									S			G	G	G		T	T										G	G	G	.	.	.	T	T		S						T	T		G	G	G				.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.																																							.	.	.																			.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	V	W	R	F	S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	M	S	V	G	A	T	L	D	A	I	K	A	G	L	A	N	L	K	A	V
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.
Template Sequence		E	R	C	V	S	F	G	V	N	M	G	D	Y	H	L	N	H	E	T	W	L	R	V	K	G	E	K	V	L	N	V	K	.	.	.	.	.	.	.	.	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L
Template Known Secondary structure									S	S	S	S	S												T	T						G	G	.	.	.	.	.	.	.	.	G		S			S																	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.									.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	R	L	F	P	I	Q	L	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	M	T	A	A	V	Q	V	L	A	E	M	P	G	Y	R	V	L	V	V	G	D	M	A	E	L	G	A	E	S	E	A	C	H	V	Q	V	G	E	A	A	K	A	A	G	I	D	R	V	L	S	V	G	K	Q
Query Conservation
Alig confidence																																						.										.	.	.	.	.																			.
Template Conservation																																						.										.	.	.	.	.																			.
Template Sequence		P	H	R	F	E	V	V	L	E	H	N	G	V	R	W	I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	L	N	G	L	H	V	.	D	G	T	L	H	L	L	L	G	.	.	.	.	.	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	G	D	.	N	V	R	L	Y	C	F	G	R	D
Template Known Secondary structure		T	T	S	S							T	T							T	T			S									T	T				.	S	S								.	.	.	.	.	S	B		T	T				G	G	G	G	G	G	S		S	T	.	T							S	T	T
Template Predicted Secondary structure																																						.										.	.	.	.	.																			.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.						.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.
		394	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.				.	.										.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure									.																																	.	.	.			.	.	.	.	.	.	.	.	.
Query SS confidence									.																																	.	.	.			.	.	.	.	.	.	.	.	.
Query Sequence		S	H	A	I	S	T	A	.	S	G	V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	.	.	.	G	S	.	.	.	.	.	.	.	.	.	R	S	A	A	M	E	E	V	V	R	A	L
Query Conservation									.																																	.	.	.			.	.	.	.	.	.	.	.	.
Alig confidence									.																										.	.						.	.	.			.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.
Template Sequence		G	A	Q	L	A	A	L	R	P	E	V	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q	P	G	D	.	.	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R	G	N	E	F	A	R	L	A	K	E	L
Template Known Secondary structure							T	T	S	G	G	G					S	S									G	G	G			T	T		.	.							S	S	B	S	T	T	T	S	S	S
Template Predicted Secondary structure																																			.	.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.			.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.