Job Description P11880 Confidence 100.00% Date Thu Jan 5 11:33:00 GMT 2012 Rank 5 Aligned Residues 398 % Identity 21% Template c3lk7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a Resolution 1.50 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80					.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																.	.	.											.	.	.	.											.	.	.	.	.	.	.
Query SS confidence																																																.	.	.											.	.	.	.											.	.	.	.	.	.	.
Query Sequence		D	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	.	.	.	L	D	I	D	L	P	Q	L	I	V	.	.	.	.	K	D	T	R	L	A	F	G	E	L	.	.	.	.	.	.	.
Query Conservation																																																.	.	.											.	.	.	.											.	.	.	.	.	.	.
Alig confidence																																																.	.	.											.	.	.	.											.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	E	A	A	A	R	L	L	A	K	L	G	A	I	V	T	V	N	D	G	K	P	F	D	E	N	P	T	A	Q	S	L	L	E	E	G	I	K	V	V	C	G	S	H	P	L	E	L	L	D	E	D	F	C	Y	X	I	K	N	P	G	I	P	Y	N	N	P	X	V	K	K	A	L	E	K	Q	I	P	V
Template Known Secondary structure		T											T	T								S	S		G	G	G										T	T						S				G	G	G	G	G	S									T	T	S		T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
					91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																							.
Query SS confidence		.	.	.																																																							.
Query Sequence		.	.	.	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	M	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	N	L	N	N	D	I	G	V	P	M	T	.	L	L	R	L	T	P	E	Y	D	Y	A	V	I	E	L	G	A	N	H	Q	G	E
Query Conservation		.	.	.																																																							.
Alig confidence		.	.	.																																													.	.	.	.							.
Template Conservation																																																	.	.	.	.
Template Sequence		L	T	E	V	E	L	A	Y	L	V	S	E	S	Q	L	I	G	I	T	G	S	N	G	K	T	T	T	T	T	X	I	A	E	V	L	N	A	G	G	Q	R	G	L	L	A	G	N	.	.	.	.	I	G	F	P	A	S	E	V	V	Q	A	A	N	D	K	D	T	L	V	X	E	L	S	S	F	Q	L	X	G
Template Known Secondary structure														S								S	S																T	T								T	.	.	.	.	S	S	S						T	T	T			T	T													T	T
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	A	A	A	H	L	E	G	F	G	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	M	N	A	D	N	N	D	W	L	N	W	Q	S	V	I	G	S	R	K	V	W	R	F	S	P	N	A	A	N	S
Query Conservation
Alig confidence		.	.	.	.																																																																.
Template Conservation		.	.	.	.																																																																.
Template Sequence		.	.	.	.	V	K	E	F	R	P	H	I	A	V	I	T	N	L	X	P	T	H	L	D	Y	H	G	S	F	E	D	Y	V	A	A	K	W	N	I	Q	N	Q	X	S	S	S	D	F	L	V	L	N	F	N	Q	G	I	S	K	E	L	A	K	T	T	K	A	.	T	I	V	P	F	S	T	T	E	K	V	D
Template Known Secondary structure		.	.	.	.		S	S				S									S							S	S										G	G	G	T	T			T	T	S						T	T	S								T	T		S	S	.							S	S	S			S
Template Predicted Secondary structure		.	.	.	.																																																																.
Template SS confidence
						176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	M	S	V	G	A	T	L	D	A	I	K	A	G	L	A	N	L	K	A	V	P	G	R	L	F	P	I	Q	L	A	E	N	Q
Query Conservation
Alig confidence							.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.
Template Sequence		G	A	Y	V	Q	.	.	.	.	.	.	.	D	K	Q	L	F	Y	K	G	E	N	I	X	S	V	D	D	I	G	V	P	G	S	H	N	V	E	N	A	L	A	T	I	A	V	A	K	L	A	G	I	S	N	Q	V	I	R	E	T	L	S	N	F	G	G	V	K	H	R	L	Q	S	L	G	K	V	H	G	I
Template Known Secondary structure		S					.	.	.	.	.	.	.	T	T					T	T						G	G	G	S	S	S		S																		T																	T	T	S	S							T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.								.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.					400	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		L	L	L	D	D	S	Y	N	A	N	V	G	S	M	T	A	A	V	Q	V	L	A	E	M	P	G	Y	R	V	L	V	V	G	D	M	A	E	L	G	A	E	S	E	A	C	H	V	Q	V	G	E	A	A	K	A	A	G	I	D	R	V	L	S	V	G	K	Q	S	H	A	I	S	T	.	.	.	.	A	S	G
Query Conservation																																																																											.	.	.	.
Alig confidence																					.	.	.																														.	.	.	.	.	.																	.	.	.	.
Template Conservation																					.	.	.																														.	.	.	.	.	.
Template Sequence		S	F	Y	N	D	S	K	S	T	N	I	L	A	T	Q	K	A	L	S	.	.	.	G	F	D	N	T	K	V	I	L	I	A	G	G	L	D	R	G	N	E	F	D	E	L	I	P	D	I	T	G	.	.	.	.	.	.	L	K	H	X	V	V	L	G	E	S	A	S	R	V	K	R	A	A	Q	K	A	G	V
Template Known Secondary structure							T	T			S										.	.	.	T	S		G	G	G								S			S				G	G	G					T	T	.	.	.	.	.	.		S						S	T	T											T	T
Template Predicted Secondary structure																					.	.	.																														.	.	.	.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.							.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.													.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	G	S	.	.	.	.	.	.	.	.	.	.	.	.	R	S	A	A	M	E	E	V	V	R	A	L	Q	E	N
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		T	Y	S	D	A	L	D	V	R	D	A	V	H	K	A	Y	E	V	A	Q	Q	G	D	.	.	V	I	L	L	S	P	A	N	A	S	W	D	X	Y	K	N	F	E	V	R	G	D	E	F	I	D	T	F	E	S	L	R	G	E
Template Known Secondary structure							S	S														T	T		.	.							S	S		S	T	T	T	S	S	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.			.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.