Job Description P11880 Confidence 100.00% Date Thu Jan 5 11:33:00 GMT 2012 Rank 7 Aligned Residues 417 % Identity 18% Template c3hn7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution Resolution 1.65 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		L	S	Q	L	T	D	I	L	N	G	E	L	Q	G	A	D	I	T	L	D	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	.	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	L	D	I	D	L	P	Q	L	I	V	K	D	T	R
Query Conservation																																														.
Alig confidence																.	.	.	.	.	.	.	.	.																						.				.	.																							.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.																										.	.																							.	.	.	.	.	.
Template Sequence		L	A	L	L	A	R	A	L	G	H	T	V	T	G	.	.	.	.	.	.	.	.	.	S	D	A	N	I	Y	P	P	X	S	T	Q	L	E	Q	A	G	V	T	I	E	E	G	Y	L	.	.	I	A	H	L	Q	P	A	P	D	L	V	V	V	G	N	A	X	K	R	G	X	D	.	.	.	.	.	.	V	I
Template Known Secondary structure									T	T						.	.	.	.	.	.	.	.	.			S				T	T								T	T						S			.	.	G	G	G	G		S			S						T	T			T	T	S		.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																										.	.																							.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.										30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.
		85	.	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.																		.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	F	G	E	L	.	.	.	.	.	.	.	.	.	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	M	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	N	D
Query Conservation								.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Y	X	L	D	T	G	L	R	Y	T	S	G	P	Q	F	L	S	E	Q	V	L	Q	S	R	H	V	I	A	V	A	G	T	H	G	K	T	T	T	T	T	X	L	A	W	I	L	H	Y	A	G	I	D	A	G	F	L	I	G	G	V	P	L	V	N	T	T	D	T	N	L	Q	Q	V	F	A	H	S	S	Y
Template Known Secondary structure								T														T	G	G	G	S								S	S																T	T								S			B				S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		I	G	V	P	M	T	L	L	R	L	T	P	E	Y	D	Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W	T	V	S	L	T	.	.	R	P	E	A	A	L	V	N	N	L	A	A	A	H	L	E	G	F	G	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I
Query Conservation																																						.	.
Alig confidence																																						.	.																					.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		L	G	T	E	K	D	D	S	D	N	S	V	N	T	G	Y	F	V	I	E	A	D	E	Y	D	S	A	F	F	D	K	R	S	K	F	V	H	Y	R	P	R	T	A	I	L	N	N	L	E	F	D	D	L	D	A	I	Q	T	.	.	.	.	.	.	Q	F	H	H	X	V	R	X	I	P	S	T	G	K	I	I
Template Known Secondary structure								S	S		T	T												S				B	T	T	B											S																		.	.	.	.	.	.							T	T	S		T	T	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.							.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		M	N	A	D	N	N	D	W	L	N	W	Q	S	V	I	G	S	R	K	V	W	R	F	S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	.	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	M	S
Query Conservation																																																									.
Alig confidence																																																									.
Template Conservation
Template Sequence		X	P	A	A	T	I	S	L	E	D	T	L	A	K	G	V	W	T	P	I	W	R	T	S	V	I	D	N	S	S	D	W	Q	A	E	L	I	S	A	D	G	S	Q	F	T	V	S	F	N	D	N	K	E	A	T	A	L	V	N	W	S	X	S	G	L	H	N	V	N	N	A	L	V	A	I	A	A	A	Y	N
Template Known Secondary structure				S	S										T				S													S								T	T	T	T							T	T											S			S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		V	G	A	T	L	D	A	I	K	A	G	L	A	N	L	K	A	V	P	G	R	L	F	P	I	Q	L	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	M	T	A	A	V	Q	V	L	A	E	.	M	P	G	Y	R	V	L	V	V	G	D	M	A	E	L	G	A	E	S	E	A	C	H	V	Q
Query Conservation																																																								.
Alig confidence																																						.																		.
Template Conservation																																						.
Template Sequence		I	G	V	S	V	K	T	A	C	A	A	L	S	A	F	A	G	I	K	R	R	X	E	L	I	G	D	V	N	D	I	L	V	F	D	D	.	F	A	H	H	P	T	A	I	T	T	T	L	D	G	A	K	K	K	L	A	D	R	R	L	W	A	I	I	E	P	R	S	N	T	X	K	X	G	I	H	Q	D	S
Template Known Secondary structure		T	T												T				B	T	T	S	S							T	T							.				S																T	T	S												S	S			S			T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.													.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	E	A	A	K	A	A	G	I	D	R	V	L	S	V	G	K	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	H	A	I	S	T	A	S	G	V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	G	S	R	S	A	A	M	E	E	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		L	A	Q	S	A	T	L	A	.	.	D	H	T	L	W	Y	E	P	T	G	L	E	W	G	L	K	E	V	I	D	N	A	T	I	A	N	P	S	I	G	S	Q	Q	V	L	S	S	V	D	D	I	I	K	H	I	C	T	H	A	K	A	G	D	A	I	V	I	X	S	N	G	G	F	E	G	I	H	Q	R	L
Template Known Secondary structure						T	T	T	S	.	.	S								T	T				S													G	G	G							S															T	T								S	S		G	G	G
Template Predicted Secondary structure										.	.
Template SS confidence
		417	.	.	420	.	.	.	.			.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		443	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	A	L	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	A	L	G	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500