Job Description P11880 Confidence 100.00% Date Thu Jan 5 11:33:00 GMT 2012 Rank 16 Aligned Residues 290 % Identity 20% Template c3eagA_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides Resolution 2.55 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	Q	L	T	D	I	L	N	G	E	L	Q	G	A	D	I	T	L	D	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	L	D	I	D	L	P	Q	L	I	V	K	D	T	R	L
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Sequence		L	A	A	I	A	K	E	A	G	F	E	V	S	G	C	D	A	K	X	Y	P	P	X	S	T	Q	L	E	A	L	G	I	D	V	Y	E	G	F	D	.	.	.	.	.	.	.	.	.	A	A	Q	L	D	E	F	K	A	D	V	Y	V	I	G	N	V	A	K	R	G	X	D	.	.	.	.	.	.	V	V	E
Template Known Secondary structure									T	T								S	S			T	T								T	T						S			.	.	.	.	.	.	.	.	.	G	G	G	G	G	S				S						T	T			T	T			.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.							.	80	.
		86	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150
Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																									.	.	.	.	.																			.
Query SS confidence							.	.	.	.	.	.	.	.	.																																									.	.	.	.	.																			.
Query Sequence		A	F	G	E	L	.	.	.	.	.	.	.	.	.	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	M	T	A	A	I	L	S	Q	C	G	N	T	L	Y	.	.	.	.	.	T	A	G	N	L	N	N	D	I	G	V	P	M	T	L	L	R	L	.	T	P
Query Conservation							.	.	.	.	.	.	.	.	.																																									.	.	.	.	.																			.
Alig confidence							.	.	.	.	.	.	.	.	.																																									.	.	.	.	.																			.
Template Conservation
Template Sequence		A	I	L	N	L	G	L	P	Y	I	S	G	P	Q	W	L	S	E	N	V	L	H	H	H	W	V	L	G	V	A	G	T	H	G	K	T	T	T	A	S	X	L	A	W	V	L	E	Y	A	G	L	A	P	G	F	L	I	G	G	V	P	E	N	F	G	V	S	A	R	L	P	Q	T	P	R	Q	D	P	N	S
Template Known Secondary structure						T	T														T	G	G	G	S							S	S	S																T	T								S	S			T	T	S	S		S								S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		E	Y	D	Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W	T	V	S	L	.	.	T	R	P	E	A	A	L	V	N	N	L	A	A	A	H	L	E	G	F	G	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	M	N	A	D	N	N	D	W	L	N	W	Q
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		Q	S	P	F	F	V	I	E	A	D	E	Y	D	T	A	F	F	D	K	R	S	K	F	V	H	Y	R	P	R	T	A	V	L	N	N	L	E	F	D	H	A	D	I	F	A	D	L	G	A	I	Q	T	Q	F	H	Y	L	V	R	T	V	P	S	E	G	L	I	V	C	N	G	R	Q	Q	S	L	Q	D	T	L
Template Known Secondary structure													S				T	T					G	G	G	G	S			S												T	T	T	S	S	S													T	T	S		T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	G	S	R	K	V	W	R	F	S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	M	S	V	G	A	T	L	D	A	I	K	A	G	L	A
Query Conservation
Alig confidence																		.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		D	K	G	C	W	T	P	V	E	K	F	G	T	E	H	G	.	.	.	.	.	W	Q	A	G	E	A	N	A	D	G	S	F	D	V	L	L	D	G	K	T	A	G	R	V	K	W	D	L	X	G	R	H	N	R	X	N	A	L	A	V	I	A	A	A	R	H	V	G	V	D	I	Q	T	A	C	E	A	L	G
Template Known Secondary structure		T	T				S						S	S	S	S	S	.	.	.	.	.								T	T	S							T	T												S																		T
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		309	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	K	A	V	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	K	N	V	K	R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions