Job Description P11880 Confidence 100.00% Date Thu Jan 5 11:33:00 GMT 2012 Rank 3 Aligned Residues 399 % Identity 26% Template c2wtzC_ PDB info PDB header:ligase Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate- PDBTitle: mure ligase of mycobacterium tuberculosis Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.							70	.	.
Predicted Secondary structure																				.	.	.																																																			.	.	.	.	.	.
Query SS confidence																				.	.	.																																																			.	.	.	.	.	.
Query Sequence		I	S	V	T	L	S	Q	L	T	D	I	L	N	G	E	L	Q	G	.	.	.	A	D	I	T	L	D	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	.	.	.	.	.	.	P	L	D
Query Conservation																				.	.	.																																																			.	.	.	.	.	.
Alig confidence																				.	.	.																																																			.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	V	R	L	A	A	L	A	D	Q	V	G	A	A	L	A	E	G	V	T	E	D	R	T	V	T	G	V	T	L	R	A	Q	D	V	S	P	G	D	L	F	A	A	L	T	G	S	T	T	H	G	A	R	H	V	G	D	A	I	A	R	G	A	V	A	V	L	T	D	P	A	G	V	A	E	I	A	G	R
Template Known Secondary structure													T	T				S				T	T	T								S		G	G	G			T	T							B		S	S		B	G	G	G	G							T	T																S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																														.	.																																										.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.																																										.	.	.	.	.	.	.	.	.
Query Sequence		I	D	L	P	Q	L	I	V	K	D	T	R	L	A	F	G	E	L	A	A	W	V	R	Q	Q	V	P	A	.	.	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	M	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	N	L	N	N	D	I	G	V	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.																																										.	.	.	.	.	.	.	.	.
Alig confidence																														.	.																																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	V	P	V	L	V	H	P	A	P	R	G	V	L	G	G	L	A	A	T	V	Y	G	H	P	S	E	R	L	T	V	I	G	I	T	G	T	S	G	K	T	T	T	T	Y	L	V	E	A	G	L	R	A	A	G	R	V	A	G	L	I	G	T	I	G	I	R	V	G	G	A	D	L	P	S	A	L	T	T
Template Known Secondary structure			S	S						S	S	S												T	T		G	G	G	S	S							S	S	S																T	T							S	S	S					T	T						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
				142	.	.	.	.	.	.						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.
Predicted Secondary structure		.	.								.	.	.	.	.																																																											.
Query SS confidence		.	.								.	.	.	.	.																																																											.
Query Sequence		.	.	P	M	T	L	L	R	L	.	.	.	.	.	T	P	E	Y	D	Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	A	A	A	H	L	E	G	F	G	S	L	A	G	V	A	K	A	K	G	E	I	F	.	S	G	L	P	E	N	G
Query Conservation		.	.								.	.	.	.	.																																																											.
Alig confidence		.	.								.	.	.	.	.															.	.																																											.
Template Conservation																														.	.
Template Sequence		P	E	A	P	T	L	Q	A	M	L	A	A	M	V	E	R	G	V	D	T	V	V	M	E	V	S	S	H	.	.	A	L	A	L	G	R	V	D	G	T	R	F	A	V	G	A	F	T	N	L	S	R	D	H	L	D	F	H	P	S	M	A	D	Y	F	E	A	A	S	L	F	D	P	D	S	A	L	R	A	R
Template Known Secondary structure																	T	T												.	.					T	T	T	T	T				S									S			T	T	T	S	S	S									T	T	T		T	T	S	T	T			S
Template Predicted Secondary structure																														.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		I	A	I	M	N	A	D	N	N	D	W	L	N	W	Q	S	V	I	G	S	R	K	V	W	R	F	S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	.	.	P	T	G	S	V	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A
Query Conservation																																																							.	.
Alig confidence																							.	.																															.	.
Template Conservation																							.	.
Template Sequence		T	A	V	V	C	I	D	D	D	A	G	R	A	M	A	A	R	A	A	D	A	.	.	I	T	V	S	A	A	D	R	P	A	H	W	R	A	T	D	V	A	P	T	D	A	G	G	Q	Q	F	T	A	I	D	P	A	G	V	G	H	H	I	G	I	R	L	P	G	R	Y	N	V	A	N	C	L	V	A	L	A
Template Known Secondary structure								S	S											S	S		.	.					S	S	S	S			S										T	T	T									T	T	S								S			S
Template Predicted Secondary structure																							.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	M	S	V	G	A	T	L	D	A	I	K	A	G	L	A	N	L	K	A	V	P	G	R	L	F	P	I	Q	L	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	M	T	A	A	V	Q	V	L	A	E	M	P	G	Y	R	V	L	V	V	G	D	M	A	E	L	G	A	E	S	E	A	C
Query Conservation
Alig confidence																						.							.	.	.	.	.									.																	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.							.	.	.	.	.									.																	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	D	T	V	G	V	S	P	E	Q	A	V	P	G	L	R	E	I	R	.	V	P	G	R	L	E	.	.	.	.	.	Q	G	F	L	A	L	V	D	.	Y	A	H	K	P	E	A	L	R	S	V	L	T	T	L	A	.	.	.	H	R	L	A	V	V	F	R	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T															.		T	T	S	S	B	.	.	.	.	.									.				S										T	T		.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.							.	.	.	.	.									.																	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.						380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.				.	.	.	.	.	.	410	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	Q	V	G	E	A	A	K	A	A	G	I	D	R	V	L	S	V	G	K	Q	S	H	A	I	S	T	A	S	G	V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	G
Query Conservation
Alig confidence		.	.	.	.	.							.										.
Template Conservation		.	.	.	.	.							.										.
Template Sequence		.	.	.	.	.	A	P	M	G	R	I	.	A	D	L	V	V	V	T	D	P	.	T	A	I	R	R	E	I	L	A	Q	V	V	E	I	A	D	R	R	D	A	I	R	H	A	V	A	W	A	R	P	G	D	V	V	L	I	A	G	K	G
Template Known Secondary structure		.	.	.	.	.							.										.																S														T	T							S
Template Predicted Secondary structure		.	.	.	.	.							.										.
Template SS confidence
							430	.	.	.	.	.		.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.