 |
Job Description | P11880 | Confidence | 25.13% | Date | Thu Jan 5 11:33:00 GMT 2012 |
Rank | 337 | Aligned Residues | 105 |
% Identity | 17% | Template | c2nuxB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate |
PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution
|
Resolution | 2.50 Å |
|
 |
  |   |
329 | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | D | D | S | Y | N | A | N | V | G | S | M | T | A | A | V | Q | V | L | A | E | M | P | G | Y | R | V | L | V | V | G | D | M | A | E | L | G | A | E | S | E | A | C | H | V | Q | V | G | E | A | A | K | A | A | G | I | D | R | V | L | S | V | G | K | Q | S | H | A | I | S | T | A | S | G | V | G | E | H | F | A |
Query Conservation |   |
|   |
|   |
|
|
|
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
Template Conservation |   |
|   |   |
|
|   |
|
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |
|
|   |   |   |
|
|
|
|
|   |   |   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
Template Sequence |   |
F | D | K | Q | G | K | V | N | V | D | A | L | K | T | H | A | K | N | L | L | E | K | G | I | D | A | I | F | V | N | G | T | T | G | L | G | P | A | L | S | K | D | E | K | R | Q | N | L | N | A | L | Y | D | V | T | H | K | L | I | F | Q | V | G | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L |
Template Known Secondary structure |   |
B |
| T | T | S |
| B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | T | S | T | T | T | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S |
|  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. |
  |
  |   |
409 | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | |
. | . | . | . | . | 430 | . | . | . | . | . | |
. | . | . | . | 440 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | K | T | A | L | I | T | R | L | K | L | L | I | A | E | Q | . |
Q | V | I | T | I | L | V | K | G | S | R | . |
S | A | A | M | E | E | V | V | R | A | L | Q | E |
Query Conservation |   |
  |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   | . |
|   |   |   |
|
|
|
|
|
|   | . |   |   |   |
|
|   |
|
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|
|   |
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
N | L | N | D | V | M | E | L | V | K | F | S | N | E | M | D | I | L | G | V | S | S | H | S | P | Y | Y | F | P | R | L | P | E | K | F | L | A | K | Y | Y | E | E |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  |  |
|
|
| S |
|
| S |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|