Job Description P11880 Confidence 80.23% Date Thu Jan 5 11:33:00 GMT 2012 Rank 146 Aligned Residues 118 % Identity 12% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		95	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																		.																.	.
Query SS confidence																.	.																		.																.	.
Query Sequence		R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	.	.	S	G	K	T	S	V	K	E	M	T	A	A	I	L	S	Q	C	.	G	N	T	L	Y	T	A	G	N	L	N	N	D	I	G	.	.	V	P	M	T	L	L	R	L	T	P	E	Y	D	Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W
Query Conservation																.	.																		.																.	.
Alig confidence																.	.																		.																.	.
Template Conservation
Template Sequence		L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A
Template Known Secondary structure		S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		T	V	S	L	T	.	.	.	R	P	E	A	A	L	V	N	N	L	A	A	A	H	L	E	G	F	G	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	M
Query Conservation							.	.	.
Alig confidence							.	.	.																	.	.	.	.	.
Template Conservation																										.	.	.	.	.
Template Sequence		A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	.	.	.	.	.	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V
Template Known Secondary structure									T	T		S											S	S		.	.	.	.	.																	S
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions