Job Description P11880 Confidence 100.00% Date Thu Jan 5 11:33:00 GMT 2012 Rank 2 Aligned Residues 433 % Identity 28% Template c2am1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d- PDBTitle: sp protein ligand 1 Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.				.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		S	V	T	L	S	Q	L	T	D	I	L	N	G	E	L	Q	.	.	.	G	A	D	I	T	L	D	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	L	D	I	D	L	P	Q	L	I
Query Conservation																		.	.	.
Alig confidence																		.	.	.																														.																									.
Template Conservation																																																		.																									.
Template Sequence		K	L	T	I	H	E	I	A	Q	V	V	G	A	K	N	D	I	S	I	F	E	D	T	Q	L	E	K	A	E	F	D	S	R	L	I	G	T	G	D	L	F	V	P	L	K	G	A	R	.	D	G	H	D	F	I	E	T	A	F	E	N	G	A	A	V	T	L	S	E	K	E	V	S	.	N	H	P	Y	I	L
Template Known Secondary structure				B									T		S	S		S	T	T	S				B						S		G	G	G			T	T							B	S	S	S	.	B	G	G	G	G								T		S					S	S				.	S	S
Template Predicted Secondary structure																																																		.																									.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	D	T	R	L	A	F	G	E	L	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	M	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	N	L	N	N	D	I	G	V	P	M	T	L	L	R	L	T	P	E	Y	D	Y	A	V	I	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	D	V	L	T	A	F	Q	S	L	A	S	Y	Y	L	E	K	T	T	V	D	V	F	A	V	T	G	S	N	G	K	T	T	T	K	D	X	L	A	H	L	L	S	T	R	Y	K	T	Y	K	T	Q	G	N	Y	N	N	E	I	G	L	P	Y	T	V	L	H	X	P	E	G	T	E	K	L	V	L	E	X
Template Known Secondary structure			S																													S	S	S											T	T	T	S							T	T			S	T	T								T			T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	N	H	Q	G	E	I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	A	A	A	H	L	E	G	F	G	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	M	N	A	D	N	N	D	W	L	N	W	Q	S	V	I	G	S	R	K	V	W	R	F
Query Conservation
Alig confidence																																																																						.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		G	Q	D	H	L	G	D	I	H	L	L	S	E	L	A	R	P	K	T	A	I	V	T	L	V	G	E	A	H	L	A	F	F	K	D	R	S	E	I	A	K	G	K	X	Q	I	A	D	G	X	A	S	G	S	L	L	L	A	P	A	D	P	I	V	E	D	Y	L	.	.	.	P	I	D	K	K	V	V	R	F
Template Known Secondary structure				S	S	T	T												S										S	S		T	T												G	G	G	G	T	T			T	T							S		G	G	G	G	G	G		.	.	.		S	S	S
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	M	S	V	G	A	T	L	D	A	I	K	A	G	L	A	N	L	K	A	V	P	G	R	L	F	P
Query Conservation
Alig confidence			.	.	.																											.	.
Template Conservation			.	.	.																											.	.
Template Sequence		G	.	.	.	Q	G	A	E	L	E	I	T	D	L	V	E	R	K	D	S	L	T	F	K	A	N	F	L	E	Q	.	.	A	L	D	L	P	V	T	G	K	Y	N	A	T	N	A	X	I	A	S	Y	V	A	L	Q	E	G	V	S	E	E	Q	I	R	L	A	F	Q	H	L	E	L	T	R	N	R	T	E	W
Template Known Secondary structure		S	.	.	.	T	T	S	S	B									S	S							T	T		S	S	.	.					S	S																			T	T										G	G	G								S
Template Predicted Secondary structure			.	.	.																											.	.
Template SS confidence
		237				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		I	Q	L	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	M	T	A	A	V	Q	V	L	A	E	M	P	G	.	.	.	.	Y	R	V	L	V	V	G	D	M	A	E	L	G	A	E	S	E	A	C	H	V	Q	V	G	E	A	A	K	A	A	G	I	D	R	V	L	S	V	G	K	Q	S	H
Query Conservation																																			.	.	.	.
Alig confidence																																			.	.	.	.
Template Conservation
Template Sequence		K	K	A	A	N	G	A	D	I	L	S	D	V	Y	N	A	N	P	T	A	X	K	L	I	L	E	T	F	S	A	I	P	A	N	E	G	G	K	K	I	A	V	L	A	D	X	K	E	L	G	D	Q	S	V	Q	L	H	N	Q	X	I	L	S	L	S	P	D	V	L	D	I	V	I	F	Y	G	E	D	I	A
Template Known Secondary structure					T	T	T								S			S												T	T	S				S	S															T	T								G	G	G	G			T	T	T		S							S	T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		396	.	.	.													400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	S	T	.	.	.	.	.	.	.	.	.	.	.	.	A	S	G	V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	G	S	R	S	A	A	M	E	E	V	V	R	A	L	Q
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation																																												.	.
Template Sequence		Q	L	A	Q	L	A	S	Q	X	F	P	I	G	H	V	Y	Y	F	K	K	T	E	D	Q	D	Q	F	E	D	L	V	K	Q	V	K	E	S	L	G	A	H	D	.	.	Q	I	L	L	K	G	S	N	S	X	N	L	A	K	L	V	E	S	L	E
Template Known Secondary structure											S		T	T							B	S	S	S		B	T														T	T		.	.						S	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.			.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.