Job Description P11880 Confidence 100.00% Date Thu Jan 5 11:33:00 GMT 2012 Rank 9 Aligned Residues 390 % Identity 17% Template c1j6uA_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution Resolution 2.30 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.										.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.							.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.							.	.	.	.
Query Sequence		L	S	Q	L	T	D	I	L	N	G	E	L	Q	G	A	D	I	T	.	.	.	.	.	.	.	.	.	L	D	A	V	T	T	.	.	.	.	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	L	D
Query Conservation																				.	.	.	.	.	.	.	.	.							.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.							.	.	.	.																					.																				.	.	.
Template Conservation																																																											.																				.	.	.
Template Sequence		V	A	L	H	E	F	S	N	G	N	D	V	Y	G	S	N	I	E	E	T	E	R	T	A	Y	L	R	K	L	G	I	P	I	F	V	P	H	S	A	D	N	W	Y	D	P	D	L	V	I	K	T	P	A	V	R	D	D	.	N	P	E	I	V	R	A	R	X	E	R	V	P	I	E	N	R	L	H	.	.	.
Template Known Secondary structure									T	T								S	S											T	T					S	S			T	T	S					S						T	T			T	T	.										T	T									.	.	.
Template Predicted Secondary structure																																																											.																				.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	L	P	Q	L	I	V	K	D	T	R	L	A	F	G	E	L	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	M	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	N	L	N	N	D	I	G	V	P	M	T	L	L	R	L	T	P	E	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	R	D	T	L	K	R	E	K	K	E	E	F	A	V	T	G	T	D	G	K	T	T	T	T	A	X	V	A	H	V	L	K	H	L	R	K	S	P	T	V	F	L	G	G	.	.	.	I	X	D	S	L	E	H	G	N	Y	E	K	G	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			S	S	S															T	T								S	S	.	.	.			T	T	S	T	T	S	S					S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.
Template SS confidence
																			92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	A	A	A	H	L	E	G	F	G	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	M	N	A	D	N	N	D	W	L	N	W	Q	S	V	I	G
Query Conservation
Alig confidence														.	.	.	.	.																																						.	.
Template Conservation														.	.	.	.	.																																						.	.
Template Sequence		G	P	V	V	Y	E	L	D	E	S	E	E	.	.	.	.	.	F	F	S	E	F	S	P	N	Y	L	I	I	T	N	A	R	G	D	H	L	E	N	Y	G	N	S	L	T	R	Y	R	S	A	F	E	K	I	.	.	S	R	N	T	D	L	V	V	T	F	A	E	D	E	L	T	S	H	L	G	D	V	T	F
Template Known Secondary structure		S								T	T	S	G	.	.	.	.	.	G	G	G	G				S												G	G	G	G	T	T													.	.			T		S						T	T		T	T	T	G	G	G		S
Template Predicted Secondary structure														.	.	.	.	.																																						.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		S	R	K	V	W	R	F	S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	.	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	M	S	V	G	A	T	L	D	A	I	K	A	G	L	A	N	L	K
Query Conservation																																									.
Alig confidence			.	.	.	.	.	.	.	.	.																														.
Template Conservation			.	.	.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	.	V	K	K	G	T	Y	T	L	E	X	R	S	A	S	R	A	E	Q	K	A	X	V	E	K	N	G	K	R	Y	L	E	L	K	L	K	V	P	G	F	H	N	V	L	N	A	L	A	V	I	A	L	F	D	S	L	G	Y	D	L	A	P	V	L	E	A	L	E	E	F	R
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	S	S	S	S	S										S	S									T	T									S	S		S																	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Template SS confidence
		225										.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		312	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																														.
Query SS confidence											.	.																														.
Query Sequence		A	V	P	G	R	L	F	P	I	.	.	Q	L	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	M	T	A	A	V	Q	V	L	A	E	.	M	P	G	Y	R	V	L	V	V	G	D	M	A	E	L	G	A	E	S	E	A	C	H	V	Q	V	G	E	A	A	K	A	A	G	I	D	R	V	L
Query Conservation											.	.																														.
Alig confidence											.	.												.																		.											.	.	.	.	.												.	.	.	.	.	.
Template Conservation																								.																													.	.	.	.	.												.	.	.	.	.	.
Template Sequence		G	V	H	R	R	F	S	I	A	F	H	D	P	E	T	N	I	Y	V	I	D	D	.	Y	A	H	T	P	D	E	I	R	N	L	L	Q	T	A	K	E	V	F	E	N	E	K	I	V	V	I	F	.	.	.	.	.	Q	P	H	R	G	N	F	A	K	A	L	.	.	.	.	.	.	Q	L	A	D	E	V	V
Template Known Secondary structure				T	T	S	S							T	T	T	T							.				S																S	S	S							.	.	.	.	.			B									.	.	.	.	.	.	T	T	S	S
Template Predicted Secondary structure																								.																													.	.	.	.	.												.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.						.	.	.	.	350	.	.	.	.	.	.							.	.	.	360	.	.	.
		389	390	.							.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		S	V	G	.	.	.	.	.	.	K	Q	S	H	A	I	S	T	A	S	G	V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	G	S	R	S	A	A	M	E	E	V	V	R	A	L	Q	E	N
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																											.	.
Template Conservation																																					.	.
Template Sequence		V	T	E	V	Y	D	S	G	K	X	I	W	D	S	L	K	S	L	G	K	E	A	Y	F	V	E	K	L	P	E	L	E	K	V	I	.	.	S	V	S	E	N	T	V	F	L	F	V	G	A	G	D	I	I	Y	S	S	R	R	F	V	E	R	Y	Q	S	S
Template Known Secondary structure						B													T	T								S	G	G	G						.	.				S	S								S	S	T
Template Predicted Secondary structure																																					.	.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.			.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.