Job Description P11880 Confidence 100.00% Date Thu Jan 5 11:33:00 GMT 2012 Rank 11 Aligned Residues 375 % Identity 19% Template c1gqqA_ PDB info PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae Resolution 3.1 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.															.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	Q	L	T	D	I	L	N	G	E	L	Q	G	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	L	D	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																								.															.	.	.	.	.	.	.
Template Conservation																																				.																								.															.	.	.	.	.	.	.
Template Sequence		I	A	E	I	L	L	N	E	G	Y	Q	I	S	G	S	D	I	A	D	G	V	V	T	Q	R	L	A	Q	A	G	A	K	I	Y	.	I	G	H	A	E	E	H	I	E	G	A	S	V	V	V	V	S	S	A	I	K	D	D	.	N	P	E	L	V	T	S	K	Q	K	R	I	P	V	.	.	.	.	.	.	.
Template Known Secondary structure										T								S			S										T					.		S			G	G	G	G	T	T		S						S	S	S		T	T	.										T					.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.																								.															.	.	.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	D	L	P	Q	L	I	V	K	D	T	R	L	A	F	G	E	L	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	M	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	N	L	N	N	D	I	G	V	P	M	T	L	L	R	L	T	P	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	R	A	Q	M	L	A	E	I	M	R	F	R	H	G	I	A	V	A	G	T	H	G	K	T	T	T	T	A	M	I	S	M	I	Y	T	Q	A	K	L	D	P	T	F	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	S							S	S	S	S															T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	A	A	A	H	L	E	G	F	G	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	M	N	A	D	N	N	D	W	L	N	W	Q	S	V	I
Query Conservation
Alig confidence		.												.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation		.												.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Sequence		.	R	Y	L	I	A	E	A	D	E	F	L	.	.	.	.	.	.	.	.	.	H	L	Q	P	M	V	S	V	V	T	N	M	E	F	E	K	M	K	A	.	.	.	.	.	.	.	.	.	T	Y	V	K	F	L	H	N	L	P	F	Y	G	L	A	V	M	C	A	D	D	P	V	L	M	E	L	V	P	K	V
Template Known Secondary structure		.												.	.	.	.	.	.	.	.	.	S				S															.	.	.	.	.	.	.	.	.								T	S		T	T							T	T
Template Predicted Secondary structure		.												.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
			168	.	170	.	.	.	.	.	.	.	.										.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.										.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		G	S	R	K	V	W	R	F	S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	.	V	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	M	S	V	G	A	T	L	D	A	I	K	A	G	L	A	N	L
Query Conservation																																									.
Alig confidence					.	.																																			.
Template Conservation					.	.
Template Sequence		G	R	Q	.	.	V	I	T	Y	G	F	S	E	Q	A	D	Y	R	I	E	D	Y	E	Q	T	G	F	Q	G	H	Y	T	V	I	C	P	N	N	E	R	I	N	V	L	L	N	V	P	G	K	H	N	A	L	N	A	T	A	A	L	A	V	A	K	E	E	G	I	A	N	E	A	I	L	E	A	L	A	D	F
Template Known Secondary structure			S		.	.						S	S	T	T		S										T	T									T	T	S								S	S		S																T	T													T
Template Predicted Secondary structure					.	.
Template SS confidence
		243	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		311	.	.	.	.	.	.	.	.	320					.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																														.
Query SS confidence												.	.	.	.																														.
Query Sequence		K	A	V	P	G	R	L	F	P	I	.	.	.	.	Q	L	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	M	T	A	A	V	Q	V	L	A	E	.	M	P	G	Y	R	V	L	V	V	G	D	M	A	E	L	G	A	E	S	E	A	C	H	V	Q	V	G	E	A	A	K	A	A	G	I	D
Query Conservation												.	.	.	.																														.
Alig confidence												.	.	.	.												.																		.													.	.																				.
Template Conservation																											.																															.	.																				.
Template Sequence		Q	G	A	G	R	R	F	D	Q	L	G	E	F	I	R	P	N	G	K	V	R	L	V	D	D	.	Y	G	H	H	P	T	E	V	G	V	T	I	K	A	A	R	E	G	W	G	D	K	R	I	V	M	I	F	Q	P	.	.	H	R	Y	S	R	T	R	D	L	F	D	D	F	V	Q	V	L	S	Q	.	V	D
Template Known Secondary structure				S	S	S	S	S									T	T									.				S															S	S	S										.	.	B																	T	T	.	S	S
Template Predicted Secondary structure																											.																															.	.																				.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.
		386	.	.	.												390	.	.	.	.	.	.	.	.	.	400	.						.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query Sequence		R	V	L	S	.	.	.	.	.	.	.	.	.	.	.	V	G	K	Q	S	H	A	I	S	T	A	S	.	.	.	.	.	G	V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	G	S	R	S	A	A	M	E	E	V	V	R	A	L	Q
Query Conservation						.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation
Template Sequence		A	L	I	M	L	D	V	Y	A	A	G	E	A	P	I	V	G	A	D	S	K	S	L	C	R	S	I	R	N	L	G	K	V	D	P	I	L	V	S	D	T	S	Q	L	G	D	V	L	D	Q	I	I	Q	D	G	D	L	I	L	A	Q	G	A	G	S	V	S	K	I	S	R	G	L	A	E	S	W	K
Template Known Secondary structure									B		T	T					T	T		S												T	S									G	G	G											T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.