Job Description P33018 Confidence 99.72% Date Thu Jan 5 11:50:53 GMT 2012 Rank 119 Aligned Residues 228 % Identity 15% Template c2y6vB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i) Resolution 2.83 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.								.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																			.	.	.																																					.	.	.	.	.	.	.
Query SS confidence																			.	.	.																																					.	.	.	.	.	.	.
Query Sequence		S	T	L	N	C	P	M	T	F	S	I	F	L	P	P	P	R	.	.	.	D	H	T	P	P	P	V	L	Y	W	L	S	G	L	T	C	N	D	E	N	F	T	T	K	A	G	A	Q	R	V	A	A	E	L	G	I	.	.	.	.	.	.	.	V	L	V	M	P	D	T	S	P	R	G	E	K	V	A	N	D
Query Conservation																			.	.	.																																					.	.	.	.	.	.	.
Alig confidence																			.	.	.																										.	.	.									.	.	.	.	.	.	.														.	.	.	.
Template Conservation																																															.	.	.																													.	.	.	.
Template Sequence		A	T	D	R	L	E	L	T	Y	D	V	Y	T	S	A	E	R	R	R	S	R	T	A	T	R	L	N	L	V	F	L	H	G	S	G	M	S	K	V	V	W	E	Y	Y	L	.	.	.	P	R	L	V	A	A	D	A	E	G	N	Y	A	I	D	K	V	L	L	I	D	Q	V	N	H	G	D	S	.	.	.	.
Template Known Secondary structure																S						T	T												T	T			G	G	G	G	G	G	G	G	.	.	.	G	G	S					T	T	T													T	T	S				.	.	.	.
Template Predicted Secondary structure																																															.	.	.																													.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		D	G	Y	D	L	G	Q	G	A	G	F	Y	L	N	A	T	Q	P	P	W	A	T	H	Y	R	M	Y	D	Y	L	R	D	E	L	P	A	L	V	Q	S	Q	F	N	V	S	.	.	.	D	R	C	A	I	S	G	H	S	M	G	G	H	G	A	L	I	M	A	L	K	N	P	G	K	Y	T	S	V	S	A	F
Query Conservation																																															.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	R	N	R	G	R	L	G	T	N	F	N	W	I	D	G	A	R	D	V	L	K	I	A	T	E	L	G	S	I	D	S	H	P	A	L	N	V	V	I	G	H	S	M	G	G	F	Q	A	L	A	C	D	V	L	Q	P	N	L	F	H	L	L	I	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	T	B		S																					G	G	G		S									T														T	T	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		169	170	.	.	.	.																																																									.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	I	V	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	S	V	P	W	G	I	K	A	F	S	S	Y	L	G	E	D	K
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	P	V	V	I	T	R	K	A	I	P	P	D	S	P	Q	I	P	E	N	L	Y	N	S	L	R	L	K	T	D	H	F	A	N	E	S	E	Y	V	K	Y	M	R	N	G	S	F	F	T	N	A	H	S	Q	I	L	Q	N	I	I	D	F	E	R	T	K	G	P	V	R	T	K	M	E	Q	A	Q	N	L	L
Template Known Secondary structure		S				S							T	T															T					S	S											T	S	S		T	T	S																					S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		N	A	W	L	E	W	D	S	C	A	L	M	Y	A	S	N	A	Q	D	A	I	P	T	L	I	D	Q	G	D	N	D	Q	F	L	A	D	Q	L	Q	P	A	V	L	A	E	A	A	R	Q	K	A	W	P	M	T	L	R	I	Q	P	G	Y	D	H	S	Y	Y	F	.	.	I	A	S	F	I	E	D	H	L	R
Query Conservation																																																																						.	.
Alig confidence																																							.	.	.	.	.	.																										.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		C	Y	M	N	M	Q	T	F	A	P	F	L	I	S	N	V	K	F	V	R	K	R	T	I	H	I	V	G	A	R	S	N	W	P	P	Q	N	.	.	.	.	.	.	Q	L	F	L	Q	K	T	L	Q	N	Y	H	L	D	V	I	P	G	G	S	H	L	V	N	V	E	A	P	D	L	V	I	E	R	I	N	H
Template Known Secondary structure		T	T	S		G	G	G	T						T	T	G	G	G			S								T	T								.	.	.	.	.	.									S	S							T	T			T	T					S
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.							.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		271	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	A	Q	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	I	H	E	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions