 |
| Job Description | P37195 | | Confidence | 98.28% | Date | Thu Jan 5 11:55:01 GMT 2012 |
| Rank | 132 | Aligned Residues | 44 |
| % Identity | 14% | Template | d1smyf2 |
| SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
| Resolution | 2.70 |
|
|   |   |
115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
S | L | S | R | K | Q | H | Q | V | L | S | C | I | A | N | Q | M | T | T | E | D | I | L | E | K | L | K | I | S | L | K | T | F | Y | C | H | K | H | N | I | M | M | I | L |
| Query Conservation |   |
  |
|
|   |
|
|   |   |
|
|   |
|
|   |   |
|   |
|
|
|
|
|
|   |   |
|   |
|
|   |
|
|
|   |   |
|   |   |   |
|   |   |
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |
|   |   |   |
|
|   |
|
|   |
|   |   |   |   |   |
|   |   |
|
|
|   |   |
|
|
|
|   |   |   |
|   |   |   |   |   |
|
|
|   |
|
|
| Template Sequence |   |
K | L | S | E | R | E | A | M | V | L | K | L | R | K | G | L | I | D | G | E | E | V | G | A | F | F | G | V | T | R | E | R | I | R | Q | I | E | N | K | A | L | R | K | L |
| Template Known Secondary structure |   |
T | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
| T | T | T | S | S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|