Return to main results Retrieve Phyre Job Id

Job DescriptionP37195
Confidence99.80%DateThu Jan 5 11:55:01 GMT 2012
Rank10Aligned Residues68
% Identity28%Templatec3sztB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:quorum-sensing control repressor; PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150.........160.........170......
Predicted Secondary structure 






















Query SS confidence 



































































Query Sequence  VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV
Query Conservation         

 

  

 

  
 





  
 

 


  
   
  

 
    


 
       
Alig confidence 



































































Template Conservation         

 

 


 
 
 
 
  


  
 

  

  
   
  



 

 


  
   


Template Sequence  VPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL
Template Known Secondary structure 
GGGG



TT

T

TT
SSTTT
Template Predicted Secondary structure 























Template SS confidence 



































































   169170.........180.........190.........200.........210.........220.........230......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions