Job Description P37195 Confidence 99.31% Date Thu Jan 5 11:55:01 GMT 2012 Rank 70 Aligned Residues 128 % Identity 15% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																						.	.																		.	.																																							.
Query SS confidence																						.	.																		.	.																																							.
Query Sequence		F	L	I	I	T	R	D	T	M	F	F	T	A	M	K	N	I	L	S	K	.	.	G	N	V	V	H	I	Q	N	E	E	E	I	D	V	M	L	H	.	.	Q	N	A	F	V	I	I	D	T	L	M	N	N	V	F	H	S	N	F	L	T	Q	I	E	R	L	K	P	V	H	V	I	I	F	S	P	F	N	.
Query Conservation																						.	.																		.	.																																							.
Alig confidence																						.	.																		.	.																																							.
Template Conservation
Template Sequence		V	L	V	V	D	D	E	E	S	I	T	S	S	L	S	A	I	L	E	E	E	G	Y	H	P	D	T	A	K	T	L	R	E	A	E	K	K	I	K	E	L	F	F	P	V	I	V	L	D	V	W	X	P	D	G	D	G	V	N	F	I	D	F	I	K	E	N	S	P	D	S	V	V	I	V	I	T	G	H	G
Template Known Secondary structure							S															T	T							S	S											S			S						S			T	T			T	T	T										T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
						77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.									.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	I	K	R	C	L	G	K	V	P	V	T	F	V	P	R	T	I	T	I	I	D	F	V	A	L	I	N	G	S	Y	.	.	.	.	.	.	.	.	C	S	V	P	E	A	A	V	S	L	S	R	K	Q	H	Q	V	L	S	C	I	A	N
Query Conservation		.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	D	T	A	V	K	A	I	K	K	G	A	Y	E	F	L	E	K	P	F	S	V	E	R	F	L	L	T	I	K	H	A	F	E	E	Y	S	K	K	A	P	P	Q	E	E	I	E	F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	K
Template Known Secondary structure													T							S	S																		S															S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions