Job Description P37195 Confidence 99.91% Date Thu Jan 5 11:55:01 GMT 2012 Rank 5 Aligned Residues 167 % Identity 14% Template c1kgsA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Resolution 1.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																		.	.
Query SS confidence																						.	.																		.	.
Query Sequence		F	L	I	I	T	R	D	T	M	F	F	T	A	M	K	N	I	L	S	K	.	.	G	N	V	V	H	I	Q	N	E	E	E	I	D	V	M	L	H	.	.	Q	N	A	F	V	I	I	D	T	L	M	N	N	V	F	H	S	N	F	L	T	Q	I	E	R	L	K	P	V	H	V	I	I	F	S	P	F	N	I
Query Conservation																						.	.																		.	.
Alig confidence																						.	.																		.	.
Template Conservation
Template Sequence		V	L	V	V	E	D	E	R	D	L	A	D	L	I	T	E	A	L	K	K	E	X	F	T	V	D	V	C	Y	D	G	E	E	G	X	Y	X	A	L	N	E	P	F	D	V	V	I	L	D	I	X	L	P	V	H	D	G	W	E	I	L	K	S	X	R	E	S	G	V	N	T	P	V	L	X	L	T	A	L	S
Template Known Secondary structure							S	S														T	T							S	S											S			S						S			S	S	S												T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		78						.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.																									.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	.	.	.	.	.	R	C	L	G	K	V	P	V	T	F	V	P	R	T	I	T	I	I	D	F	V	A	L	I	N	G	S	Y	C	S	V	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	V	S	L	S	R	K	Q	H	Q	V	L	S	C	I	A
Query Conservation			.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	E	Y	R	V	K	G	L	N	X	G	A	D	D	Y	L	P	K	P	F	D	L	R	E	L	I	A	R	V	R	A	L	I	R	R	K	S	E	S	K	S	T	K	L	V	C	G	D	L	I	L	D	T	A	T	K	K	A	Y	R	G	S	K	E	I	D	L	T	K	K	E	Y	Q	I	L	E	Y	L	V
Template Known Secondary structure									T						S					S	S																				S		S	S					T	T					T	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
						129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	N	Q	M	T	T	E	D	I	L	E	K	L	K	I	S	L	K	T	F	Y	C	H	K	H	N	I	M	M	I	L	N	L	K	R	I	N	E	L	V	R
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		X	N	K	N	R	V	V	T	K	E	E	L	Q	E	H	L	W	V	F	S	D	V	L	R	S	H	I	K	N	L	R	K	K	V	D	K	G	F	K	K	K	I	I	H
Template Known Secondary structure			T	T	T	S																															T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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