Job Description P0ACZ8 Confidence 100.00% Date Thu Jan 5 11:19:31 GMT 2012 Rank 6 Aligned Residues 218 % Identity 38% Template c1kgsA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Resolution 1.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	L	L	I	V	E	D	E	K	K	T	G	E	Y	L	T	K	G	L	T	E	A	G	F	V	V	D	L	A	D	N	G	L	N	G	Y	H	L	A	M	T	G	D	Y	D	L	I	I	L	D	I	M	L	P	D	V	N	G	W	D	I	V	R	M	L	R	S	A	N	K	G	M	P	I	L	L	L	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	V	L	V	V	E	D	E	R	D	L	A	D	L	I	T	E	A	L	K	K	E	X	F	T	V	D	V	C	Y	D	G	E	E	G	X	Y	X	A	L	N	E	P	F	D	V	V	I	L	D	I	X	L	P	V	H	D	G	W	E	I	L	K	S	X	R	E	S	G	V	N	T	P	V	L	X	L	T	A
Template Known Secondary structure									S	S														T	T							S	S											S			S						S			S	S	S												T	T										S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	T	I	E	H	R	V	K	G	L	E	L	G	A	D	D	Y	L	V	K	P	F	A	F	A	E	L	L	A	R	V	R	T	L	L	R	R	G	A	A	V	I	I	E	S	Q	F	Q	V	A	D	L	M	V	D	L	V	S	R	K	V	T	R	S	G	T	R	I	T	L	T	S	K	E	F	T	L	L	E
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		L	S	D	V	E	Y	R	V	K	G	L	N	X	G	A	D	D	Y	L	P	K	P	F	D	L	R	E	L	I	A	R	V	R	A	L	I	R	.	R	K	S	E	S	K	S	T	K	L	V	C	G	D	L	I	L	D	T	A	T	K	K	A	Y	R	G	S	K	E	I	D	L	T	K	K	E	Y	Q	I	L	E
Template Known Secondary structure		S									T						S					S	S																.					S		S	S					T	T					T	T	T	T					T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	L	R	H	Q	G	E	V	L	P	R	S	L	I	A	S	Q	V	W	D	M	N	F	D	S	D	T	N	A	I	D	V	A	V	K	R	L	R	G	K	I	D	N	D	F	E	P	K	L	I	Q	T	V	R	G	V	G	Y	M	L	E	V	P
Query Conservation
Alig confidence																						.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		Y	L	V	X	N	K	N	R	V	V	T	K	E	E	L	Q	E	H	L	W	.	.	.	.	.	V	F	S	D	V	L	R	S	H	I	K	N	L	R	K	K	V	D	K	G	F	K	K	K	I	I	H	T	V	R	G	I	G	Y	V	A	R	D	E
Template Known Secondary structure						T	T	T	S													.	.	.	.	.																			T	T		S	S							T	T	T
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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