Job Description P0AFH2 Confidence 99.73% Date Thu Jan 5 11:26:15 GMT 2012 Rank 8 Aligned Residues 285 % Identity 12% Template c3fh6F_ PDB info PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Resolution 4.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		M	L	K	F	I	L	R	R	C	L	E	A	I	P	T	L	F	I	L	I	T	I	S	F	F	.	.	.	.	M	M	R	L	A	P	G	S	P	F	T	G	E	R	T	L	P	P	E	V	M	A	N	I	E	A	K	Y	H	L	N	D	P	I	M	T	Q	Y	F	S	Y	L	K	Q	L	A	H	G	D	F	G
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	T	L	I	L	S	S	A	G	L	Y	I	Y	V	Y	P	G	M	A	G	M	G	L	F	V	L	F	P	L	V	C	T	I	A	I	A	F	T	N	Y	S	S	T	N	Q	L	T	F	E	R	A	Q	E	V	L	L	D	R	S	K	N	F	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																											T									T	T	S	S	S	S		S	S	S		S	S											T				T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	F	K	Y	K	D	Y	S	V	N	D	L	V	A	S	S	F	P	V	S	A	K	L	G	A	A	A	F	F	L	A	V	I	L	G	V	S	A	G	V	I	A	A	L	K	Q	N	T	K	W	D	Y	T	V	M	G	L	A	M	T	G	V	V	I	P	S	F	V	V	A	P	L	L	V	M	I	F	A	I
Query Conservation
Alig confidence		.	.	.																																											.
Template Conservation		.	.	.																																											.
Template Sequence		.	.	.	V	F	T	D	E	G	I	Q	K	P	F	L	A	I	F	V	W	T	V	V	F	S	L	I	T	V	F	L	T	V	A	V	G	M	V	L	A	C	L	V	Q	W	.	E	A	L	R	G	K	A	V	Y	R	V	L	L	I	L	P	Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F	N	Q
Template Known Secondary structure		.	.	.			S		S	S	S		S																																T		.	S	S	S	S															S		S											S		S
Template Predicted Secondary structure		.	.	.																																											.
Template SS confidence
					267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		157	.	.	160	.	.	.	.	.	.										.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		I	L	H	W	L	P	G	G	G	W	.	.	.	.	.	.	.	.	.	N	G	G	A	L	K	F	M	I	L	P	M	V	A	L	S	L	A	Y	I	A	S	I	A	R	I	T	R	G	S	M	I	E	V	L	H	S	N	F	I	R	T	A	R	A	K	G	L	P	M	R	R	I	I	L	R	H	A	L	K	P
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																															.
Template Conservation																																																			.
Template Sequence		S	F	G	E	I	N	M	M	L	S	A	L	F	G	V	K	P	A	W	F	S	D	P	T	T	A	R	T	M	L	I	I	V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	.	L	K	A	I	P	D	D	L	Y	E	A	S	A	M	D	G	A	G	P	F	Q	N	F	F	K	I	T	L	P	L
Template Known Secondary structure		S	S	S										S	S					S	S	S	S																												.				S															S							T	T	T	T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.															.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	L	P	V	L	S	Y	M	G	P	A	F	V	G	I	I	T	G	S	M	V	I	E	T	I	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	G	I	G	Q	L	F	V	N	G	A	L	N	R	D	Y	S	L	V	L	S	L	T	I	L	V	G	A	L	T	I	L	F	N	A	I	V
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F	V	L	I	Q	L	L	T	N	G	G	P	D	R	L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G	G	G	Q	D	F	G	L	A	A	A	I	A	T	L	I	F	L	L	V	G	A	L
Template Known Secondary structure		T																	T										S	S		S			S	S		S	S	S			S	S										T	T		S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
		294	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	L	Y	A	V	I	D	P	K	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	V	N	L	K	A	T	R	M	K	F
Template Known Secondary structure									S	S
Template Predicted Secondary structure
Template SS confidence
		502	.	.	.	.	.	.	.	510	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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