Job Description P0AFH2 Confidence 99.87% Date Thu Jan 5 11:26:15 GMT 2012 Rank 2 Aligned Residues 204 % Identity 18% Template c3d31D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans Resolution 3.00 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	V	A	S	S	F	P	V	S	A	K	L	G	A	A	A	F	F	L	A	V	I	L	G	V	S	A	G	V	I	A	A	L	K	Q	N	T	K	W	D	Y	T	V	M	G	L	A	M	T	G	V	V	I	P	S	F	V	V	A	P	L	L	V	M	I	F	A	I	I	L	H	W	L	P	G	G	G	W	N
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		R	S	V	I	S	S	I	F	L	S	L	Y	A	G	F	L	A	T	L	L	A	L	L	L	G	A	P	T	G	Y	I	L	A	R	.	F	D	F	P	G	K	R	L	V	E	S	I	I	D	V	P	V	V	V	P	H	T	V	A	G	I	A	L	L	T	V	F	G	S	R	G	L	I	G	E	P	L	E	S	Y
Template Known Secondary structure																																		T	T	.				T	T										G	G	G	T	S														S	T	T	S	T	T	T	G	G	G	T	T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	A	L	K	F	M	I	L	P	M	V	A	L	S	L	A	Y	I	A	S	I	A	R	I	T	R	G	S	M	I	E	V	L	H	S	N	F	I	R	T	A	R	A	K	G	L	P	M	R	R	I	I	L	R	H	A	L	K	P	A	L	L	P	V	L	S	Y	M	G	P	A	F	V	G	I	I	T	G	S
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		I	Q	F	R	D	A	L	P	G	I	V	V	A	M	L	F	V	S	M	P	Y	L	A	N	S	A	R	E	G	.	F	K	S	V	D	P	R	L	E	N	A	A	R	S	L	G	A	P	L	W	K	A	F	F	F	V	T	L	P	L	S	A	R	Y	L	L	I	G	S	V	M	T	W	A	R	A	I	S	E	F
Template Known Secondary structure					T	T	S																								.				S											T	T										T																						T
Template Predicted Secondary structure																															.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		248	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		M	V	I	E	T	I	Y	.	G	L	P	G	I	G	Q	L	F	V	N	G	A	L	N	R	D	Y	S	L	V	L	S	L	T	I	L	V	G	A	L	T	I	L	F	N	A	I	V
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		G	A	V	V	I	L	A	Y	Y	P	M	V	G	P	T	L	I	Y	D	R	F	I	S	Y	G	L	S	A	S	R	P	I	A	V	L	L	I	L	V	T	L	S	I	F	L	V	I
Template Known Secondary structure										T	T														S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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