Job Description P0AE16 Confidence 0.61% Date Thu Jan 5 11:22:15 GMT 2012 Rank 60 Aligned Residues 229 % Identity 10% Template c3ddlB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:xanthorhodopsin; PDBTitle: crystallographic structure of xanthorhodopsin, a light-2 driven ion pump with dual chromophore Resolution 1.90 Å

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		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		I	R	G	V	G	F	D	A	G	E	V	G	V	V	N	K	T	L	G	L	L	A	T	I	V	G	A	L	Y	G	G	I	L	M	Q	R	L	S	L	F	R	A	L	L	I	F	G	I	L	Q	G	A	S	N	A	G	Y	W	L	L	S	I	T	D	K	H	L	Y	S	M	G	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	T	L	T	P	G	Q	Y	S	L	V	F	N	M	F	S	F	T	V	A	T	M	T	A	S	F	V	F	F	V	L	A	R	N	N	V	A	P	K	Y	R	I	S	M	M	V	S	A	L	V	V	F	I	A	G	Y	H	Y	F	R	I	T	S	S	W	E	A	A	Y	A	L	Q	N	G	M	Y	Q	P	T
Template Known Secondary structure					B																														G	G	G	S		G	G	G																												T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
					321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.				380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure		.	.	.																																																												.	.	.
Query SS confidence		.	.	.																																																												.	.	.
Query Sequence		.	.	.	A	A	V	F	F	E	N	L	C	G	G	M	G	T	S	A	F	V	A	L	L	M	T	L	C	N	K	S	F	S	A	T	Q	F	A	L	L	S	A	L	S	A	V	G	R	V	Y	V	G	P	V	A	G	W	F	V	E	A	H	.	.	.	G	W	S	T	F	Y	L	F	S	V	A	A	A	V	P
Query Conservation		.	.	.																																																												.	.	.
Alig confidence		.	.	.																																																												.	.	.
Template Conservation
Template Sequence		G	E	L	F	N	D	A	Y	R	Y	V	D	W	L	L	T	V	P	L	L	T	V	E	L	V	L	V	M	G	L	P	K	N	E	R	G	P	L	A	A	K	L	G	F	L	A	A	L	M	I	V	L	G	Y	P	G	E	V	S	E	N	A	A	L	F	G	T	R	G	L	W	G	F	L	S	T	I	P	F	V
Template Known Secondary structure		S																											S																														T		S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	I	L	L	L	V	C	R	Q	T	L	E	Y	T	R	V	N	D	N	F	I	S	R	T	A	Y	P	A	G	Y	A	F	A	M	W	T	L	A	A	G	V	S	L	L	A	V	W	L	L	L	L	T	M	D	A	L	D	L	T	H	F	S	F	L	P	A	L	L	E	V	G	V	L	V	A	L	S	G	V
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		W	I	L	Y	I	L	F	T	Q	L	G	D	T	I	Q	R	Q	S	S	R	V	S	T	L	L	G	N	A	R	L	L	L	L	A	T	W	G	F	Y	.	.	.	.	.	.	.	.	.	.	P	I	A	Y	M	I	P	M	A	N	T	P	G	T	I	V	A	L	Q	V	G	Y	T	I	A	D	V	L	A	K	A
Template Known Secondary structure									T	T	T						T	S																							.	.	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.											.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	G	G	L	L	D	Y	L	A	L	R	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	G	V	L	I	Y	N	I	A	K	A	K	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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