Job Description P0AE16 Confidence 5.62% Date Thu Jan 5 11:22:15 GMT 2012 Rank 6 Aligned Residues 280 % Identity 11% Template c3b9yA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Resolution 1.85 Å

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	A	V	V	I	A	F	C	S	A	S	Q	D	I	V	F	D	A	W	K	T	D	V	L	P	A	E	E	R	G	A	G	A	A	I	S	V	L	G	Y	R	L	G	M	L	V	S	G	G	L	A	L	W	L	A	D	K	W	L	G	W	Q	G	M	Y	W	L	M	A	A	L	L	I	P	C	I	I	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	A	V	I	Y	A	E	F	A	V	A	T	G	L	I	A	M	G	A	V	L	G	R	L	R	V	F	Q	Y	A	L	L	A	L	F	I	V	P	V	Y	L	L	N	E	W	L	V	L	D	N	A	S	G	L	T	E	G	F	Q	D	S	A	G	S	I	A	I	H	A	F	G	A	Y	F	G	L	G	V	S
Template Known Secondary structure																							T	T	S	S																								T	T		T	T	S	S		T	T				T	T		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	P	E	P	T	D	T	I	P	V	P	K	T	L	E	Q	A	V	V	A	P	L	R	D	F	F	G	R	N	N	A	W	L	I	L	L	L	I	V	L	Y	K	L	G	D	A	F	A	M	S	L	T	T	T	F	L	I	R	G	V	G	F	D	A	G	E	V	G	V	V	N	K	T	L	G	L	L	A
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	L	T	T	A	A	Q	R	A	Q	P	I	E	S	D	A	T	S	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	M	L	G	S	M	V	L	W	L	F	W	P	S	F	A	.	.	.	.	.	.	.	.	.	.	T	A	I	V	P	F	E	Q	M	P	Q	T	I	V	N	T	L	L	A
Template Known Secondary structure											T	S											.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.		T	T	S		G	G	G
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.														.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.											220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	V	G	A	L	Y	G	G	I	L	M	Q	R	L	S	L	F	R	A	L	L	I	F	G	I	L	Q	G	A	S	N	A	G	Y	W	L	L	S	I	T	D	K	H	L	Y	S	M	G	A	A	V	F	F	E	N	L	C	G	G	M	G	T	S	A	F	V	A	L	L	M	T	L	C	N	K	S	F	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	C	G	A	T	L	A	T	Y	F	L	S	A	L	F	H	K	G	K	A	S	I	V	D	M	A	N	A	A	L	A	G	G	V	A	I	G	S	V	C	N	I	V	G	P	V	G	A	F	V	I	G	L	L	G	G	A	I	S	V	V	G	F	V	F	I	Q	P	M	L	E	S	K	A	K	T	I	D	T	C
Template Known Secondary structure																	T	T	T											T	T							T	T	T	T	T	T	S																						T									S					T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		T	Q	F	A	L	L	S	A	L	S	A	V	G	R	V	Y	V	G	P	V	A	G	W	F	.	.	V	E	A	H	G	W	S	T	F	Y	L	F	S	V	A	A	A	V	P	G	L	I	L	L	L	V	C	R	Q	T	L	E	Y	T	R	V	N	D	N
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		G	V	H	N	L	H	G	L	P	G	L	L	G	G	F	S	A	I	L	I	V	P	G	I	A	V	A	Q	L	T	G	I	G	I	T	L	A	L	A	L	I	G	G	V	I	A	G	A	L	I	K	L	T	G	T	T	K	Q	A	Y	E	D	S	H	E
Template Known Secondary structure							T	T														S	T	T																													T	T				S	S	T	T		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions