Job Description P0AE16 Confidence 99.96% Date Thu Jan 5 11:22:15 GMT 2012 Rank 5 Aligned Residues 382 % Identity 9% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.							.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																															.		.	.	.	.	.	.																	.	.															.
Query SS confidence																															.		.	.	.	.	.	.																	.	.															.
Query Sequence		R	S	A	I	L	L	I	L	G	F	A	S	G	L	P	L	A	L	T	S	G	T	L	Q	A	W	M	T	V	.	E	.	.	.	.	.	.	N	I	D	L	K	T	I	G	F	F	S	L	V	G	Q	A	.	.	Y	V	F	K	F	L	W	S	P	L	M	D	R	Y	.	T	P	P	F	F	G	R	R	R	G
Query Conservation																															.		.	.	.	.	.	.																	.	.															.
Alig confidence																															.		.	.	.	.	.	.																	.	.															.		.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.
Template Sequence		Q	I	P	Y	I	I	A	S	E	A	C	E	R	F	S	F	Y	G	M	R	N	I	L	T	P	F	L	M	T	A	L	L	L	S	I	P	E	E	L	R	G	A	V	A	K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	.	.	.	.	.	.	K	Y	N
Template Known Secondary structure				T																											S		S	S			S	S	S	T	T	T	T	T															T									T	T	S	S		.	.	.	.	.	.	S
Template Predicted Secondary structure																																																																									.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		W	L	L	A	T	Q	I	L	L	L	V	A	I	A	A	M	G	F	L	E	P	G	T	Q	L	R	W	M	A	A	L	A	V	V	I	A	F	C	S	A	S	Q	D	I	V	F	D	A	W	K	T	D	V	L	P	A	E	E	R	G	A	.	.	.	G	A	A	I	S	V	L	G	Y	R	L	G	M	L	V	S
Query Conservation																																																															.	.	.
Alig confidence																					.	.																																									.	.	.
Template Conservation																					.	.
Template Sequence		T	I	L	W	L	S	L	I	Y	C	V	G	H	A	F	L	A	I	F	.	.	E	H	S	V	Q	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S	S	F	M	G	D	Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	M	F	Y	F	T	I	N	F	G	S	F	F	A
Template Known Secondary structure																				T	.	.	S	S																		T	T											T		S	T	T	T	T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	L	A	L	W	L	A	D	K	W	L	G	W	Q	G	M	Y	W	L	M	A	A	L	L	I	P	C	I	I	A	T	L	L	A	P	E	P	T	D	T	I	P	V	P	K	T	L	E	Q	A	V	V	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	S	M	P	L	L	L	K	N	F	G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G	N	I	G	L	V	L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T	L	G	I	V	A	G	L	C	C	A
Template Known Secondary structure				T	S	T					T	S																						S	S	S	S	S							T	T																			T	G	G	G	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
																													215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	D	F	F	G	R	N	N	A	W	L	I	L	L	L	I	V	L	Y	K	L	G	D	A	F	A	M	S	L	T	T	T	F	L	I	R	G	V	G	F	D	A	G	E	V	G	V	V	N	K	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	V	L	V	M	G	F	V	G	A	G	A	S	L	Q	L	E	R	A	R	K	S	H	P	D	A	A	V	D	G	V	R	S	V	L	R	I	L	V	L	F	A	L	V	T	P	F	W	S	L	F	D	Q	K	A	S	T	W	I	L	Q	A	N	D	M	V	K	P	Q	W	F	E	P	A	M	M	Q	A	L	N
Template Known Secondary structure											T	G	G	G	T					S			S			S	S	S	S	T	T	T	T	T									T	T	S					T	T	T	S	S	T	T	T									S				S	S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	L	A	T	I	V	G	A	L	Y	G	G	I	L	M	Q	R	L	S	L	F	R	A	L	L	I	F	G	I	L	Q	G	A	S	N	A	G	Y	W	L	L	S	I	T	D	K	H	L	Y	S	M	G	A	A	V	F	F	E	N	L	C	G	G	M	G	T	S	A	F	V	A	L	L	M	T	L	C	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	L	V	M	L	L	I	P	F	N	N	F	V	T	A	L	R	K	M	G	A	G	I	A	I	T	G	L	S	W	I	V	V	G	T	I	Q	L	M	M	D	G	G	S	A	L	S	I	F	W	Q	I	L	P	Y	A	L	L	T	F	G	E	V	L	V	S	A	T	G	L	E	F	A	Y	S	Q	A	P	K
Template Known Secondary structure		G	G	G					G	G	G	T	T	T									T											T	T	T	T	T	T	T	T	T	T	T	T					S																						T	T	T							T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	S	A	T	Q	F	A	L	L	S	A	L	S	A	V	G	R	V	Y	V	G	P	V	A	G	W	F	V	E	A	H	G	W	S	T	F	Y	L	F	S	V	A	A	A	V	P	G	L	I	L	L	L	V	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	K	G	T	I	M	S	F	W	T	L	S	V	T	V	G	N	L	W	V	L	L	A	N	V	S	V	K	S	P	T	V	T	E	Q	I	V	Q	T	G	M	S	V	T	A	F	Q	M	F	F	F	A	G	F
Template Known Secondary structure		T			T	T	T					G	G	G															T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.