Job Description P0AE16 Confidence 0.85% Date Thu Jan 5 11:22:15 GMT 2012 Rank 37 Aligned Residues 251 % Identity 12% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

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		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.								.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.
Query Sequence		E	R	G	A	G	A	A	I	S	V	L	G	Y	R	L	G	M	L	V	S	G	G	L	A	L	W	L	A	D	.	.	.	.	.	.	.	K	W	L	G	W	Q	G	M	Y	W	L	M	A	A	L	L	I	P	C	I	I	A	T	L	L	A	P	E	P	T	D	T	I	P	V	P	K	T	L	E	Q	A	V	V
Query Conservation																															.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		E	R	A	K	V	S	S	F	I	L	L	S	A	L	W	L	T	F	V	Y	A	P	F	A	H	W	L	W	G	G	G	W	L	A	K	L	G	A	L	D	F	A	G	G	M	V	V	H	I	S	S	G	F	A	A	L	A	V	A	M	T	I	G	K	R	A	G	F	E	E	Y	S	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	B																T										S	S						T	T				S	S		T	T	T	T																			T	T	T	T	T	S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	L	R	D	F	F	G	R	N	N	A	W	L	I	L	L	L	I	V	L	Y	K	L	G	D	A	F	A	M	S	L	T	T	T	F	L	I	R	G	V	G	F	D	A	G	E	V	G	V	V	N	K	T	L	G	L	L	A	T	I	V	G	A	L	Y	G	G	I	L	M	Q	R	L	S	L	F	R	A	L
Query Conservation
Alig confidence		.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	I	E	P	H	S	I	P	L	T	L	I	G	A	A	L	L	W	F	G	W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	.	.	.	.	.	.	.	.	.	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S
Template Known Secondary structure		.	.	.	.	.	.				S																						G	G	G	S	S	S	S			.	.	.	.	.	.	.	.	.																											S
Template Predicted Secondary structure		.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
								182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.										.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	F	G	I	L	Q	G	A	S	N	A	G	Y	W	L	L	S	I	T	D	K	H	L	Y	S	M	G	A	A	V	F	F	E	N	L	C	G	G	M	G	T	S	A	F	V	A	L	L	M	T	L	C	N	K	S	F	S	A	T	Q	F	A	L	L	S	A	L	S	A	V	G	R	V	Y	V	G	P	V	A
Query Conservation
Alig confidence																															.	.	.	.	.																										.	.	.	.	.
Template Conservation																															.	.	.	.	.																										.	.	.	.	.
Template Sequence		L	G	I	V	S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	V	K	G	A	I	V	I	.	.	.	.	.	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	R	I	K	K	K	I	D	E	S	L	D	.	.	.	.	.	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V
Template Known Secondary structure																T	T	T	T	T	T										.	.	.	.	.																		T	T				T	T		.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.																										.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.						.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300						.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		373	.	.	.	.	.																.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.
Query Sequence		G	W	F	V	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	W	S	T	.	.	F	Y	L	F	S	V	A	A	A	V	P	G	L	I	L	L	L	V	C	R	Q	T	L	E	Y	T	R	V	N	D	N	F	I	S	R	T	A	Y	P	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.
Template Conservation
Template Sequence		G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	G	L	R	V	S	S	Q	E	E	Y	V	G	L	D	L	S	Q
Template Known Secondary structure											S				G	G	G	T																																		T		S	B
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions