Job Description P23721 Confidence 99.92% Date Thu Jan 5 11:39:37 GMT 2012 Rank 106 Aligned Residues 337 % Identity 13% Template c3qguB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii Resolution 1.55 Å

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		2	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																					.
Query SS confidence											.	.																					.
Query Sequence		A	Q	I	F	N	F	S	S	G	.	.	P	A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	.	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G
Query Conservation											.	.																					.
Alig confidence											.	.																					.																						.	.	.														.	.
Template Conservation																																																							.	.	.														.	.
Template Sequence		A	K	I	I	S	L	G	I	G	D	T	T	E	P	L	P	K	Y	I	A	D	A	M	A	K	A	A	A	G	L	A	T	R	E	G	Y	S	G	Y	G	A	E	Q	G	Q	G	A	L	R	E	A	V	A	.	.	.	S	T	F	Y	G	H	A	G	R	A	A	D	E	.	.	I	F	I	S	D	G	S	K	C
Template Known Secondary structure								S	S	S																					G	G	G	S						S	S		T	T											.	.	.					T	T	T	T			G	G	G	.	.					S
Template Predicted Secondary structure																																																							.	.	.														.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.								.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.
Query Sequence		Q	F	A	A	V	P	L	N	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	G	L	R	A	V	K	P	M	R	.	.	.	.	.	.	.	E	W	Q	L	S	D	N	A	A	Y	M	H	Y	C	P	N
Query Conservation																																																											.	.	.	.	.	.	.
Alig confidence				.																							.	.																															.	.	.	.	.	.	.
Template Conservation				.																							.	.
Template Sequence		D	I	.	A	R	I	Q	M	M	F	G	S	K	P	T	V	A	V	Q	D	P	S	Y	P	V	.	.	Y	V	D	T	S	V	M	M	G	M	T	G	D	H	N	G	T	G	F	D	G	I	E	Y	M	V	C	N	P	D	N	H	F	F	P	D	L	S	K	A	K	R	T	D	I	I	F	F	C	S	P	N	N
Template Known Secondary structure				.									S	S	S							S			T		.	.								T	T		S			B		S	S	S	B	T	T								G	G	G	T	T				T	T	S					S						S	S		T
Template Predicted Secondary structure				.																							.	.
Template SS confidence
		144	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		152	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.											.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		E	T	I	D	G	I	A	I	D	E	T	P	D	F	.	.	.	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	P	I	D	.	.	.	.	.	.	.	.	.	.	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	G	P	A	G	.	.	L	T	I	V	I	V	R	E	D	L
Query Conservation																.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		P	T	G	A	A	A	T	R	A	Q	L	T	E	L	V	N	F	A	R	K	N	G	S	I	L	V	Y	D	A	A	Y	A	L	Y	I	S	N	P	D	C	P	K	T	I	Y	E	I	P	G	A	D	E	V	A	I	E	T	C	S	F	S	K	Y	A	G	F	T	G	V	R	L	G	W	T	V	V	P	K	A	L
Template Known Secondary structure		T	T																				T								T	T	G	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G	T								S	G	G	G	T		T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N
Query Conservation
Alig confidence																				.	.	.	.																								.																																.	.	.
Template Conservation																				.	.	.	.																								.																																.	.	.
Template Sequence		K	Y	A	N	G	E	P	V	H	A	D	W	N	R	V	M	T	T	.	.	.	.	C	F	N	G	A	S	N	I	V	Q	A	G	G	L	A	C	L	Q	P	E	G	L	K	.	E	M	N	A	M	I	K	F	Y	K	E	N	A	Q	I	L	K	T	T	F	T	E	M	G	F	S	V	Y	G	G	D	.	.	.
Template Known Secondary structure		B		T	T	S		B												.	.	.	.	S																T	S						.																							T	T						S	S	.	.	.
Template Predicted Secondary structure																				.	.	.	.																								.																																.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.					.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330					.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		R	S	R	M	N	V	P	F	Q	L	A	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	.	.	.	.	V	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F
Query Conservation																																						.	.	.	.
Alig confidence		.																																				.	.	.	.										.	.
Template Conservation		.																																																	.	.
Template Sequence		.	D	A	P	Y	I	W	V	G	F	P	G	K	P	S	W	D	V	F	A	E	I	L	E	R	C	N	I	V	T	T	P	G	S	G	Y	G	P	A	G	E	G	F	V	R	A	S	A	F	.	.	G	S	R	E	N	I	L	E	A	V	R	R	F	K	E	A
Template Known Secondary structure		.	S	S	S							T	T	S																				G	G	G	G		G	G	G	T	T								.	.	S
Template Predicted Secondary structure		.																																																	.	.
Template SS confidence
			373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420			.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions