Job Description P23721 Confidence 99.94% Date Thu Jan 5 11:39:37 GMT 2012 Rank 77 Aligned Residues 336 % Identity 11% Template c3pdxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase Resolution 2.91 Å

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		2	.	.	.	.	.	.	.	10							.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.						.	.	.	.	.	.	.	70
Predicted Secondary structure											.	.	.	.	.	.																																																					.	.	.	.	.
Query SS confidence											.	.	.	.	.	.																																																					.	.	.	.	.
Query Sequence		A	Q	I	F	N	F	S	S	G	.	.	.	.	.	.	P	A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	.	.	.	.	.	V	P	S	N	Y	K	V	L
Query Conservation											.	.	.	.	.	.																																																					.	.	.	.	.
Alig confidence											.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.						.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.																											.	.
Template Sequence		K	T	V	I	S	L	S	I	G	D	P	T	V	F	G	N	L	P	T	D	P	E	V	T	Q	A	M	K	D	A	L	D	S	G	K	Y	N	G	Y	A	P	.	.	.	.	.	.	.	.	.	.	S	I	G	Y	L	S	S	R	E	E	V	A	S	Y	Y	H	C	P	E	A	P	L	E	A	K	D	.	.	V
Template Known Secondary structure		S						S				T	T	S	S	S	S	S																T	T		S	S	S				.	.	.	.	.	.	.	.	.	.	T	T													T			S	S	S				G	G	G	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.																											.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.											.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		F	C	H	G	G	G	R	G	Q	F	A	A	V	P	L	N	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	M	H	Y	C	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	T	S	G	C	S	Q	A	I	E	L	C	L	A	V	L	A	N	P	G	Q	N	I	L	I	P	R	P	G	F	S	L	Y	R	T	L	A	E	S	M	G	I	E	V	K	L	Y	N	L	L	P	E	K	S	W	E	I	D	L	K	Q	L	E	S	L	I	D	E	K	T	A	C	L	V	V	N	N	P	S
Template Known Secondary structure					S	S											T	T			S	S							S	S													T										G	G	G	T	T									T	T			S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.										.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																							.
Query Sequence		N	E	T	I	D	G	I	A	I	D	E	T	P	D	F	.	.	.	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	.	.	.	.	.	.	.	.	.	R	P	I	D	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	G	P	A	.	G	L	T	I	V	I	V	R	E	D	L	L
Query Conservation																	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																							.
Alig confidence																	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		N	P	C	G	S	V	F	S	K	R	H	L	Q	K	I	L	A	V	A	E	R	Q	C	V	P	I	L	A	D	E	I	Y	G	D	M	V	F	S	D	C	K	Y	E	P	M	A	T	L	S	T	N	V	P	I	L	S	C	G	G	L	A	R	W	L	V	P	G	W	R	L	G	W	I	L	I	H	D	R	R	D
Template Known Secondary structure		T	T	T																	T	T	T	T								T	T	T	T		B		S	S	S					G	G	G	G		S	S								B					S		G	G	G										S	S	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N	R
Query Conservation
Alig confidence												.	.	.	.	.	.																													.																																.	.	.
Template Conservation												.	.	.	.	.	.																													.																																.	.	.
Template Sequence		I	F	G	N	E	I	R	D	G	L	.	.	.	.	.	.	V	K	L	S	Q	R	I	L	G	P	C	T	I	V	Q	G	A	L	K	S	I	L	Q	R	T	P	Q	E	.	F	Y	Q	D	T	L	S	F	L	K	S	N	A	D	L	C	Y	G	A	L	S	A	I	P	G	L	Q	P	V	R	P	.	.	.	S
Template Known Secondary structure		S	S									.	.	.	.	.	.					T	T	T			S																			.																							S	T	T	B			B			.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.																													.																																.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.							310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.
		296	.	.	.	300	.	.	.	.	.	.							.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure													.	.	.	.	.	.																										.	.
Query SS confidence													.	.	.	.	.	.																										.	.
Query Sequence		S	R	M	N	V	P	F	Q	L	A	D	.	.	.	.	.	.	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	.	.	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R	H
Query Conservation													.	.	.	.	.	.																										.	.
Alig confidence													.	.	.	.	.	.																										.	.									.	.
Template Conservation																																																						.	.
Template Sequence		G	A	M	Y	L	M	V	G	I	E	M	E	H	F	P	E	F	E	N	D	V	E	F	T	E	R	L	I	A	E	Q	S	V	H	C	L	P	A	T	C	F	E	Y	P	N	F	F	R	V	V	I	T	.	.	V	P	E	V	M	M	L	E	A	C	S	R	I	Q	E	F	C	E	Q	H
Template Known Secondary structure		B	T	T						B		T	T	S			S		S	S																			G	G	G	G	T			S						S		.	.	S																	T	T	T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions