Phyre 2 alignment of P23721 with c3mafB

Job Description P23721
Confidence 100.00% Date Thu Jan 5 11:39:37 GMT 2012

Rank 35 Aligned Residues 337

% Identity 11% Template c3mafB_

PDB info PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form)

Resolution 2.97 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence	P	A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	.	.	V	L	F	C	H	G	G	G	R	G	Q	F	A	A	V	P	L	N	I	L
Query Conservation																																																											.	.
Alig confidence																															.	.	.																										.	.
Template Conservation																															.	.	.
Template Sequence	G	A	V	Y	D	E	H	H	I	A	F	L	N	E	V	Y	A	L	Q	S	Q	S	N	P	L	H	P	D	L	W	.	.	.	P	S	T	A	K	F	E	A	E	V	V	A	M	T	A	H	M	L	G	G	D	A	A	G	G	T	V	C	G	T	V	T	S	G	G	T	E	S	L	L	L	A	M	K	T	Y	R
Template Known Secondary structure																				T	T			T	T		T	T	T		.	.	.																		T	T	T	T	T	T	T	S								S	S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
	102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

									89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	M	H	Y	C	P	N	E	T	I	D	G	I	A	I	D
Query Conservation	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.																.	.
Template Conservation																								.	.
Template Sequence	D	W	A	R	A	T	K	G	I	T	A	P	E	A	V	V	P	V	S	A	H	A	A	.	.	F	D	K	A	A	Q	Y	F	G	I	K	L	V	R	T	P	L	D	A	D	Y	R	A	D	V	A	A	M	R	E	A	I	T	P	N	T	V	V	V	A	G	S	A	P	G	Y	P	H	G	V	V	D	P	I	P
Template Known Secondary structure										S	S							T	T	S		T		.	.									T								B		T	T	S	S	B											T	T								T	T		T	T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

	161	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.														.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure						.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence						.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence	E	T	P	D	F	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	.	G	P	A	G	L	T	I	V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P	S
Query Conservation						.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence						.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence	E	I	A	A	L	A	A	E	H	G	I	G	C	H	V	D	A	C	L	G	G	F	I	L	P	W	A	E	R	L	G	Y	P	V	P	P	F	D	F	R	L	E	G	V	T	S	V	S	A	D	T	H	K	Y	G	Y	G	A	K	G	T	S	V	I	L	Y	R	R	P	D	L	L	H	Y	Q	Y	F	I	A	A
Template Known Secondary structure										T								T	T	T	T	T	T						T	T	T							S	T	T	S	T	T								T	T	T	T	T				S	S							S	S												S
Template Predicted Secondary structure
Template SS confidence
	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

	225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N	R	S	R	M	N	V	P	F	Q	L
Query Conservation
Alig confidence		.																																		.																																	.	.	.	.
Template Conservation		.																																		.																																	.	.	.	.
Template Sequence	D	.	W	P	G	G	L	Y	F	S	P	T	F	A	G	S	R	P	G	A	L	S	A	T	A	W	A	A	M	L	S	L	G	E	E	.	G	Y	L	D	A	T	R	R	I	L	Q	A	A	D	R	L	K	A	G	V	R	A	I	P	S	L	K	I	L	G	D	P	.	.	.	.	L	W	V	I	A	V	A	S
Template Known Secondary structure	S	.		T	T						S	S	S		S	S																				.																						T	S	T	T				S	S			.	.	.	.	S	S
Template Predicted Secondary structure		.																																		.																																	.	.	.	.
Template SS confidence
	339		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.					.	.	.	.	.	410	.	.

	305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence	A	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	G	M	R	A	S	I	.	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R
Query Conservation																																			.
Alig confidence					.																.														.
Template Conservation					.																.
Template Sequence	D	E	L	N	.	I	Y	Q	V	M	E	E	M	A	G	R	G	W	R	L	.	N	G	L	H	R	P	P	A	F	H	V	A	L	T	L	R	H	T	E	P	G	V	V	D	R	F	L	A	D	L	Q	D	A	V	A	Q
Template Known Secondary structure	S	S	S		.											T	T				.				T	T	T	T								G	G	G	S	S	T	T
Template Predicted Secondary structure					.																.
Template SS confidence
	413	.	.	.		.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions