Job Description P23721 Confidence 99.82% Date Thu Jan 5 11:39:37 GMT 2012 Rank 181 Aligned Residues 311 % Identity 14% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.						.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	.	.	.	.	.	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G	Q	F	A	A	V	P	L	N
Query Conservation																																																				.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	F	P	E	D	A	K	K	R	A	R	R	I	L	Q	A	C	S	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I
Template Known Secondary structure		S	S	S																		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T	T					G	G	G					S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.																		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		87	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																																		.	.													.	.	.	.	.
Query SS confidence									.	.	.	.																																		.	.													.	.	.	.	.
Query Sequence		I	L	G	D	K	T	T	.	.	.	.	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	.	.	G	L	R	A	V	K	P	M	R	E	W	Q	.	.	.	.	.	L	S	D	N	A	A	Y	M	H	Y	C	P	N	E	T	I	D
Query Conservation									.	.	.	.																																		.	.													.	.	.	.	.
Alig confidence									.	.	.	.											.	.																						.	.													.	.	.	.	.
Template Conservation																							.	.
Template Sequence		L	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P	L	.	.	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q
Template Known Secondary structure							G	G	G	S								S			T		.	.								T	T									B	G	G	G	T	T	B														T	T	T	S									S	S		T	T	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180																			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.			.	.	.	.
Predicted Secondary structure												.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.						.	.
Query SS confidence												.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.						.	.
Query Sequence		G	I	A	I	D	E	T	P	D	F	.	.	.	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	P	I	D	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	.	G	P	A	G	L	.	.	T	I	V	I
Query Conservation												.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.						.	.
Alig confidence												.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.						.	.
Template Conservation
Template Sequence		V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E
Template Known Secondary structure																			T								T	T	T	T		B			T	T													T						T	T									S	S	S	S	T	T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.											.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure			.	.	.																																													.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.																																													.	.	.	.	.	.	.	.	.	.
Query Sequence		V	.	.	.	R	E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	.	.	.	.	.	.	.	.	.	.	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L
Query Conservation			.	.	.																																													.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.						.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	.	.	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T
Template Known Secondary structure				S																S	.	.	.	.	.	.	.	.	.	.	.	.	.															T					T	T	S	T	T								.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.														.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.			.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.														.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.						.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Query Sequence		Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N	R	S	R	M	N	V	P	F	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	.	.	.	.	.	G	G	M	R	A	S	I
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Alig confidence																	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation																	.	.	.
Template Sequence		E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	.	.	.	Q	G	A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	T	I
Template Known Secondary structure							T	S	T	T							.	.	.		B	S	S																			T	T	S																B					G	G	G	T				T	T			B
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.				.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R	H
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		L	.	.	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H	I	N	F
Template Known Secondary structure			.	.	S
Template Predicted Secondary structure			.	.
Template SS confidence
		498			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions