Job Description P23721 Confidence 99.62% Date Thu Jan 5 11:39:37 GMT 2012 Rank 227 Aligned Residues 333 % Identity 13% Template c3hmuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10			.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure											.	.					.	.	.
Query SS confidence											.	.					.	.	.
Query Sequence		A	Q	I	F	N	F	S	S	G	.	.	P	A	M	L	.	.	.	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G
Query Conservation											.	.					.	.	.
Alig confidence											.	.					.	.	.																											.	.	.	.	.	.	.																					.	.
Template Conservation																																														.	.	.	.	.	.	.																					.	.
Template Sequence		E	E	I	L	D	A	M	A	G	L	W	C	V	N	I	G	Y	G	R	D	E	L	A	E	V	A	A	R	Q	M	R	E	L	P	Y	Y	N	T	F	F	K	T	T	H	.	.	.	.	.	.	.	V	P	A	I	A	L	A	Q	K	L	A	E	L	A	P	G	D	L	N	H	.	.	V	F	F	A	G	G	G
Template Known Secondary structure							T	T					T		T	T		B																	S				S	S	S	S				.	.	.	.	.	.	.														S		T	T				.	.					S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.																					.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.											.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	Q	F	A	A	V	P	L	N	I	L	G	.	.	.	.	.	.	.	.	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	.	.	.	.	.	.	.	.	.	.	Y	C	T	P	N	V	F	D	A	K	V	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	A	N	D	T	N	I	R	M	V	R	T	Y	W	Q	N	K	G	Q	P	E	K	T	V	I	I	S	R	K	N	A	Y	H	G	S	T	V	A	S	S	A	L	G	G	M	A	G	M	H	A	Q	S	G	L	I	P	D	V	H	H	I	N	Q	P	N	W	W	A	E	G	G	D	M	D	P	E	E	F	G
Template Known Secondary structure																			T	T		T	T								T	T					S	S							S								T	T				S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
			126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.
Predicted Secondary structure		.																								.	.											.	.	.	.								.	.																			.	.	.	.	.
Query SS confidence		.																								.	.											.	.	.	.								.	.																			.	.	.	.	.
Query Sequence		.	D	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	M	H	Y	.	.	C	P	N	E	T	I	D	G	I	A	.	.	.	.	I	D	E	T	P	D	F	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	P	.	.	.	.	.	I	D	V	S	R	Y	G	V
Query Conservation		.																								.	.											.	.	.	.								.	.																			.	.	.	.	.
Alig confidence		.																								.	.											.	.	.	.								.	.																			.	.	.	.	.
Template Conservation
Template Sequence		L	A	R	A	R	E	L	E	E	A	I	L	E	L	G	E	N	R	V	A	A	F	I	A	E	P	V	Q	G	A	G	G	V	I	V	A	P	D	S	Y	W	P	E	I	Q	R	I	C	D	K	Y	D	I	L	L	I	A	D	E	V	I	C	G	F	G	R	T	G	N	W	F	G	T	Q	T	M	G	I	R	P
Template Known Secondary structure																	G	G	G								S	S	B	S	T	T	T		B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S							T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		I	Y	A	G	A	Q	K	N	I	G	P	A	G	.	.	L	T	I	V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N
Query Conservation															.	.
Alig confidence															.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		H	I	M	T	I	A	K	G	L	S	S	G	Y	A	P	I	G	G	S	I	V	C	D	E	V	A	H	V	I	G	K	D	E	F	N	H	G	.	.	.	.	.	.	.	.	.	.	Y	T	Y	S	G	H	P	V	A	A	A	V	A	L	E	N	L	R	I	L	E	E	E	N	I	L	D	H	V	R	N	V	A
Template Known Secondary structure		S						G	G	G	T	T	T	S	S																T	T	S						.	.	.	.	.	.	.	.	.	.		T	T	T	T																		T	T								T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320											.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.													.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N	R	S	R	M	N	V	P	F	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	A	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	G	M	R	A	S
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation																		.	.	.	.																																																						.	.	.
Template Sequence		A	P	Y	L	K	E	K	W	E	A	L	T	D	H	P	L	.	.	.	.	V	G	E	A	K	I	V	G	M	M	A	S	I	A	L	T	P	N	K	A	S	R	A	K	F	A	S	E	P	G	T	I	G	Y	I	C	R	E	R	C	F	A	N	N	L	I	M	R	H	V	G	D	R	.	.	.	M	I	I	S
Template Known Secondary structure											G	G	G	G	S	T	T	.	.	.	.								T	T								S		G	G	G	T			B	S	S		T	T													T	T	B						T	T		.	.	.
Template Predicted Secondary structure																		.	.	.	.																																																						.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.					370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.				.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	P	L	V	I	T	P	A	E	I	D	E	M	F	V	R	I	R	K	S	L	D	E
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions