Job Description P23721 Confidence 99.97% Date Thu Jan 5 11:39:37 GMT 2012 Rank 36 Aligned Residues 345 % Identity 11% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		A	Q	I	F	N	F	S	S	G	P	A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	.	.	.	S	N	Y	K	V	L	F	C	H	G	G	G	R	G
Query Conservation																																																																	.	.	.
Alig confidence																																					.	.	.	.	.	.	.																						.	.	.
Template Conservation																																					.	.	.	.	.	.	.
Template Sequence		P	R	L	N	L	A	S	F	V	T	T	W	M	E	P	E	C	D	K	L	I	M	S	S	I	N	K	N	Y	V	D	M	D	E	Y	.	.	.	.	.	.	.	P	V	T	T	E	L	Q	N	R	C	V	N	M	I	A	H	L	F	N	A	P	L	E	E	A	E	T	A	V	G	V	G	T	V	G	S	S	E
Template Known Secondary structure		G	G	G	B	T	T			S															T	T	T		B	T	T		T	T	T		.	.	.	.	.	.	.																		T	T					T	T									S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.														.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query Sequence		Q	F	A	A	V	P	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	.	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																						.
Template Conservation																																								.	.
Template Sequence		A	I	M	L	A	G	L	A	F	K	R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	.	.	W	E	K	F	A	R	Y	F	E	V	E	L	K	E	V	K	L	S	E	G	Y	Y	V	M	D	P	Q	Q	A	V	D	M	V	D	E	N	T	I	C	V
Template Known Secondary structure																					T	T				S								T	T					.	.								T	T									B	T	T	B		S												T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.									.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.										.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		Y	M	H	Y	C	P	N	E	T	I	D	G	I	A	I	D	E	T	P	D	F	G	A	.	.	.	.	.	.	.	.	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	P	I	.	.	.	.	.	.	.	.	.	D	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	G	P	A	G	L	T	I
Query Conservation																									.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	I	L	G	S	T	L	N	G	E	F	E	D	V	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A	A	S	G	G	F	I	A	P	F	L	Y	P	E	L	E	W	D	F	R	L	P	L	V	K	S	I	N	V	S	G	H	Y	G	L	V	Y	A	G	I	G	W
Template Known Secondary structure					B	S		T	T	T			B																												T	T	G	G	G	T						S	S				S	T	T	S	T	T															S	S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		208	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	I	V	R	.	E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y
Query Conservation						.
Alig confidence						.															.	.																																	.
Template Conservation																					.	.																																	.
Template Sequence		V	I	W	R	N	K	E	D	L	P	E	E	L	I	F	H	I	N	Y	.	.	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I	A	Q	Y	Y	Q	L	I	R	L	G	H	E	.	G	Y	R	N	V	M	E	N	C	R	E	N	M	I	V	L	R	E	G	L	E	K	T	E	R	F
Template Known Secondary structure					S	S	G	G	G	S		G	G	G						S	.	.	S	S	S							S			S		B	S																	.																						T	T	T
Template Predicted Secondary structure																					.	.																																	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.						.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.																												.	.	.	.	.
Query SS confidence																					.	.																												.	.	.	.	.
Query Sequence		R	N	D	V	A	K	A	N	R	S	R	M	N	V	P	F	Q	L	A	.	.	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	.	.	.	.	.	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R
Query Conservation																					.	.																												.	.	.	.	.
Alig confidence									.	.											.	.																												.	.	.	.	.
Template Conservation									.	.
Template Sequence		N	I	V	S	K	D	E	.	.	G	V	P	L	V	A	F	S	L	K	D	S	S	C	H	T	E	F	E	I	S	D	M	L	R	R	Y	G	W	I	V	P	A	Y	T	M	P	P	N	A	Q	H	I	T	V	L	R	V	V	I	R	E	D	F	S	R	T	L	A	E	R	L	V	I	D	I	E	K	V	M	R
Template Known Secondary structure					S		S	S	.	.	S	S	S							S	S		S	S												T	T	T		B								T	T		T	T										T	T
Template Predicted Secondary structure									.	.
Template SS confidence
		365	.	.	.	.	370	.			.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		360
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		443

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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