Job Description P23721 Confidence 99.89% Date Thu Jan 5 11:39:37 GMT 2012 Rank 140 Aligned Residues 329 % Identity 9% Template c3fdbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution Resolution 1.99 Å

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		2	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		A	Q	I	F	N	F	S	S	G	.	.	P	A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G	Q
Query Conservation											.	.
Alig confidence											.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	V	L	P	L	W	V	A	E	S	D	F	S	T	C	P	A	V	L	Q	A	I	T	D	A	V	Q	R	.	.	.	.	.	.	.	.	.	E	A	F	G	Y	Q	P	D	G	S	L	L	S	Q	A	T	A	E	F	Y	A	D	R	Y	G	Y	Q	A	R	P	E	W	I	F	P	I	P	D	V	V	R	G
Template Known Secondary structure		T	T	S					S	S				S																T	.	.	.	.	.	.	.	.	.	T			S	S			S	S																					G	G	G					S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	A	V	P	L	N	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	M	H	Y	C	P	N	E	T	I	D	G	I	A	I
Query Conservation
Alig confidence																										.	.																			.	.
Template Conservation																										.	.																			.	.
Template Sequence		L	Y	I	A	I	D	H	F	T	P	A	Q	S	K	V	I	V	P	T	P	A	Y	P	P	.	.	F	F	H	L	L	S	A	T	Q	R	E	G	I	F	I	D	A	T	.	.	G	G	I	N	L	H	D	V	E	K	G	F	Q	A	G	A	R	S	I	L	L	C	N	P	Y	N	P	L	G	X	V	F	A	P
Template Known Secondary structure										S		T	T								S			T		.	.									T									T	.	.	T	S												T	T								S	S	B	T	T	T	T	B
Template Predicted Secondary structure																										.	.																			.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure								.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence								.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		D	E	T	P	D	F	.	.	.	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	.	.	.	.	.	.	.	.	.	.	R	P	I	D	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	.	G	P	A	G	L	T	I	V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P
Query Conservation								.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence								.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		E	W	L	N	E	L	C	D	L	A	H	R	Y	D	A	R	V	L	V	D	E	I	H	A	P	L	V	F	D	G	Q	H	T	V	A	A	G	V	S	D	T	A	A	S	V	C	I	T	I	T	A	P	S	A	W	N	I	A	G	L	K	C	A	Q	I	I	F	S	N	P	S	D	A	E	H	W	Q	Q	L	S
Template Known Secondary structure														T	T								T	T	G	G	G	B	S	S	S					G	G	G	S																				G	G	G									S										S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	.	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N	R	S	R	M	N	V	P	F
Query Conservation																																																										.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																								.	.																			.													.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.																								.	.																																.	.	.
Template Sequence		P	V	.	.	.	.	.	.	.	.	.	.	.	I	K	D	G	A	S	T	L	G	L	I	A	A	E	A	A	Y	R	Y	G	T	D	F	.	.	L	N	Q	E	V	A	Y	L	K	N	N	H	D	F	L	L	H	E	I	P	K	R	I	P	G	A	K	I	T	P	X	.	.	.	Q	A	T	Y	L	X	W	I
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.																								.	.																							S	T	T							.	.	.	S	B		S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																								.	.																																.	.	.
Template SS confidence
		250	.												.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.
		303	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330					.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure					.																										.	.	.	.
Query SS confidence					.																										.	.	.	.
Query Sequence		Q	L	A	.	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	.	.	.	.	V	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R	H
Query Conservation					.																										.	.	.	.
Alig confidence					.																										.	.	.	.										.	.
Template Conservation																																												.	.
Template Sequence		D	F	R	D	T	T	I	E	G	S	P	S	E	F	F	I	E	K	A	K	V	A	X	N	D	G	A	W	F	G	E	D	G	T	G	F	C	R	L	N	F	A	.	.	T	S	R	E	V	L	E	E	A	I	D	R	X	A	K	A	V	S	H	H
Template Known Secondary structure				T	T	S				S																	G	G	G	G		G	G	G	T	T								.	.	S																	T	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions