Job Description P23721 Confidence 99.73% Date Thu Jan 5 11:39:37 GMT 2012 Rank 215 Aligned Residues 327 % Identity 9% Template c3bs8A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.						.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		A	Q	I	F	N	F	S	S	G	P	A	M	L	.	.	.	.	.	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		N	E	Y	I	D	Y	V	L	S	W	G	P	L	I	L	G	H	T	N	D	R	V	V	E	S	L	K	K	V	A	E	Y	G	T	S	F	G	A	P	T	.	.	.	.	.	.	.	.	.	.	.	E	V	E	N	E	L	A	K	L	V	I	D	R	V	P	S	V	E	I	.	.	.	V	R	M	V	S	S	G
Template Known Secondary structure							S	S	G	G	G	T	T		T	T		B	S																S			S	S			.	.	.	.	.	.	.	.	.	.	.														S	T	T		S		.	.	.					S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.												.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.																	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	Q	F	A	A	V	P	L	N	I	.	.	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	A	K	V	T	V	D	G	L	R	A	V	K	P	M	R	E	W	Q
Query Conservation													.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	E	A	T	M	S	A	L	R	L	A	R	G	Y	T	G	R	N	K	I	L	K	F	E	G	C	Y	H	G	H	G	D	S	L	L	I	K	A	G	S	G	V	A	T	L	G	L	P	D	S	P	G	V	P	E	G	I	A	K	N	T	I	T	V	P	Y	N	D	L	E	S	V	K	L	A	F	Q	Q	F	G
Template Known Secondary structure																	T									T					S		G	G	G						S	S	S	S		B				S	S	T	T			T	T	S	S	T	T						T	T													G
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.								.	.																						.	.	.	.													.
Query SS confidence																						.	.	.	.								.	.																						.	.	.	.													.
Query Sequence		L	S	D	N	A	A	Y	M	H	Y	C	P	N	E	T	I	D	G	I	A	.	.	.	.	I	D	E	T	P	D	F	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	P	I	D	V	.	.	.	.	S	R	Y	G	V	I	Y	A	G	A	Q	K	.	N	I	G	P	A	G	L	T	I
Query Conservation																						.	.	.	.								.	.																						.	.	.	.													.
Alig confidence																						.	.	.	.								.	.																						.	.	.	.													.
Template Conservation
Template Sequence		E	D	I	A	G	V	I	V	E	P	V	A	G	N	M	G	V	V	P	P	Q	E	G	F	L	Q	G	L	R	D	I	T	E	Q	Y	G	S	L	L	I	F	D	E	V	M	T	G	F	R	V	D	Y	N	C	A	Q	G	Y	F	G	V	T	P	D	L	T	C	L	G	K	V	I	G	G	G	L	P	V	G	A
Template Known Secondary structure		G	G								S	S	B		S	S	S		B				T	T													T								T	T	T	T	T	T	T	S	T	T						T	T				S						G	G	G	G	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.																								.																										.	.
Template Conservation																						.	.	.	.	.	.	.	.	.																								.																										.	.
Template Sequence		Y	G	G	K	A	E	I	M	E	Q	I	A	P	S	G	P	I	Y	Q	A	.	.	.	.	.	.	.	.	.	G	T	L	S	G	N	P	L	A	M	T	A	G	L	E	T	L	K	Q	L	T	P	D	.	S	Y	K	N	F	I	K	K	G	D	R	L	E	E	G	I	S	K	A	A	E	A	H	G	I	.	.
Template Known Secondary structure										T	T	B	T	T	T	S	S	B				.	.	.	.	.	.	.	.	.		S	S	T	T														T					.																							T	T		.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																								.																										.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.										.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310														.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	V	A	K	A	N	R	S	R	M	N	V	P	F	Q	L	A	D	S	A	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation		.	.																																																				.	.	.	.
Template Sequence		.	.	P	H	T	F	N	R	A	G	S	M	I	G	F	F	F	T	N	E	P	V	I	N	Y	E	T	A	K	A	S	D	L	K	L	F	A	S	Y	Y	K	G	M	A	N	E	G	V	F	L	P	P	S	.	.	.	.	Q	F	E	G	L	F	L	S	T	A	H	T	D	E	D	I	E	N	T	I	Q	A	A
Template Known Secondary structure		.	.								T	T						S	S	S	S				S					T	T	S															T	T					S	S	.	.	.	.	S	S	S		B				T	T
Template Predicted Secondary structure		.	.																																																				.	.	.	.
Template SS confidence
				347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		355	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	F	E	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	V	F	A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions