Job Description P23721 Confidence 99.78% Date Thu Jan 5 11:39:37 GMT 2012 Rank 197 Aligned Residues 338 % Identity 10% Template c3a8uX_ PDB info PDB header:transferase Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase; PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase Resolution 1.40 Å

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		2	.	.	.	.	.	.	.	10			.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure											.	.					.	.	.
Query SS confidence											.	.					.	.	.
Query Sequence		A	Q	I	F	N	F	S	S	G	.	.	P	A	M	L	.	.	.	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G
Query Conservation											.	.					.	.	.
Alig confidence											.	.					.	.	.																										.	.	.	.	.	.	.	.																					.	.
Template Conservation																																													.	.	.	.	.	.	.	.																					.	.
Template Sequence		R	K	V	Y	D	S	L	S	G	L	W	T	C	G	A	G	H	T	R	K	E	I	Q	E	A	V	A	K	Q	L	S	T	L	D	Y	S	P	G	F	Q	Y	G	H	.	.	.	.	.	.	.	.	P	L	S	F	Q	L	A	E	K	I	T	D	L	T	P	G	N	L	N	H	.	.	V	F	F	T	D	S	G
Template Known Secondary structure							T	T					T		T	T		B	S												T	T	T		S				S	S	S				.	.	.	.	.	.	.	.												T	T	S	S	T	T				.	.					S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.									.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																									.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	Q	F	A	A	V	P	L	N	I	.	.	.	.	.	.	.	.	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	C	T	P	N	V	F	D	A	K	V	T
Query Conservation													.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	C	A	L	T	A	V	K	M	V	R	A	Y	W	R	L	K	G	Q	A	T	K	T	K	M	I	G	R	A	R	G	Y	H	G	V	N	I	A	G	T	S	L	G	G	V	N	G	N	R	K	L	F	G	Q	P	M	Q	D	V	D	H	L	P	H	T	L	L	A	S	N	A	Y	S	R	G	M	P	K	E
Template Known Secondary structure																			T	T		T	T								T	T					S	S														T	T	T				S		S										G	G	G	T	T		S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.								180	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.																					.	.	.	.								.	.															.	.	.	.	.	.	.
Query SS confidence																.	.	.	.																					.	.	.	.								.	.															.	.	.	.	.	.	.
Query Sequence		V	D	G	L	R	A	V	K	P	M	R	E	W	Q	.	.	.	.	L	S	D	N	A	A	Y	M	H	Y	C	P	N	E	T	I	D	G	I	A	.	.	.	.	I	D	E	T	P	D	F	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	.	.	.	.	.	.	.	L	S	R	P	I	D	V	S
Query Conservation																.	.	.	.																					.	.	.	.								.	.															.	.	.	.	.	.	.
Alig confidence																.	.	.	.																					.	.	.	.								.	.															.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	I	A	L	A	D	E	L	L	K	L	I	E	L	H	D	A	S	N	I	A	A	V	F	V	E	P	L	A	G	S	A	G	V	L	V	P	P	E	G	Y	L	K	R	N	R	E	I	C	N	Q	H	N	I	L	L	V	F	D	E	V	I	T	G	F	G	R	T	G	S	M	F	G	A	D	S	F	G	V
Template Known Secondary structure		S																	G	G	G								S	S	B	T	T	T	T		B				T	T													T								T	T	T	T	T	T	T	T	S	S	S	S						T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	G	V	I	Y	A	G	A	Q	K	N	I	G	P	A	G	L	T	I	V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K
Query Conservation
Alig confidence																																								.	.	.	.	.	.																													.
Template Conservation																																								.	.	.	.	.	.																													.
Template Sequence		T	P	D	L	M	C	I	A	K	Q	V	T	N	G	A	I	P	M	G	A	V	I	A	S	T	E	I	Y	Q	T	F	M	N	Q	P	T	P	E	.	.	.	.	.	.	Y	A	V	E	F	P	H	G	Y	T	Y	S	A	H	P	V	A	C	A	A	G	L	A	A	L	C	L	L	.	Q	K	E	N	L	V	Q
Template Known Secondary structure				S						G	G	G	G	T	T	S	S																	T		S	S		T	.	.	.	.	.	.	T	S		S	S					T	T	T	T																.			T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.																													.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.							.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.						.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N	R	S	R	M	N	V	P	F	Q	L	A	D	S	A	L	D	K	.	.	.	.	.	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	G	M	R	A	S	I	Y	N	A	M
Query Conservation																																														.	.	.	.	.
Alig confidence																				.																										.	.	.	.	.																				.	.	.
Template Conservation																				.																																																		.	.	.
Template Sequence		S	V	A	E	V	A	P	H	F	E	K	A	L	H	G	I	K	G	.	A	K	N	V	I	D	I	R	N	F	G	L	A	G	A	I	Q	I	A	P	R	D	G	D	A	I	V	R	P	F	E	A	G	M	A	L	W	K	A	G	F	Y	V	R	F	G	G	D	T	.	.	.	L	Q	F	G	P	T	F	N	S
Template Known Secondary structure																T	T	T	T	.	S	T	T								T	T									B	T	T	B	S	S														T							T	T		.	.	.							T	T
Template Predicted Secondary structure																				.																																																		.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.				420	.	.	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	Q	D	L	D	R	L	F	D	A	V	G	E	V	L	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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